Variant report

Variant	rs182285503
Chromosome Location	chr8:114384627-114384628
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:114384559-114384836	IMR90	lung:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
2	SMC3	chr8:114384613-114384918	Hela-S3	cervix:	n/a	chr8:114384756-114384770
3	CTCF	chr8:114384509-114385034	MCF-7	breast:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
4	RAD21	chr8:114384562-114384944	ECC-1	luminal epithelium:	n/a	chr8:114384755-114384774
5	CTCF	chr8:114384620-114384770	GM06990	blood:	n/a	n/a
6	CTCF	chr8:114384552-114384937	GM12878	blood:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
7	RAD21	chr8:114384585-114384841	HepG2	liver:	n/a	chr8:114384755-114384774
8	STAT3	chr8:114384587-114384676	MCF10A-Er-Src	breast:	n/a	n/a
9	SMC3	chr8:114384549-114384881	SK-N-SH	brain:	n/a	chr8:114384756-114384770
10	CTCF	chr8:114384600-114384750	GM12865	blood:	n/a	n/a
11	CTCF	chr8:114384600-114384750	NHDF-neo	bronchial:	n/a	n/a
12	RAD21	chr8:114384615-114384824	H1-hESC	embryonic stem cell:	n/a	chr8:114384755-114384774
13	ZNF143	chr8:114384619-114384911	GM12878	blood:	n/a	n/a
14	CTCF	chr8:114384600-114384750	HEEpiC	esophagus:	n/a	n/a
15	CTCF	chr8:114384533-114384986	SK-N-SH	brain:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
16	SMC3	chr8:114384586-114384915	GM12878	blood:	n/a	chr8:114384756-114384770
17	RAD21	chr8:114384592-114384942	Hela-S3	cervix:	n/a	chr8:114384755-114384774
18	CTCF	chr8:114384620-114384770	SAEC	small airway:	n/a	n/a
19	CTCF	chr8:114384521-114384934	MCF-7	breast:	n/a	chr8:114384756-114384777 chr8:114384754-114384772
20	RAD21	chr8:114384626-114384822	HepG2	liver:	n/a	chr8:114384755-114384774
21	RAD21	chr8:114384477-114385019	MCF-7	breast:	n/a	chr8:114384755-114384774
22	CTCF	chr8:114384600-114384750	GM12869	blood:	n/a	n/a
23	RAD21	chr8:114384478-114384986	SK-N-SH	brain:	n/a	chr8:114384755-114384774
24	RAD21	chr8:114384605-114384926	H1-hESC	embryonic stem cell:	n/a	chr8:114384755-114384774
25	RAD21	chr8:114384589-114384972	H1-hESC	embryonic stem cell:	n/a	chr8:114384755-114384774

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:114384438..114385053-chr8:114992865..114993457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227514	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754581	chr8:114029421-114419106	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2754463	chr8:114353649-114501547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1019362	chr8:114377031-114419106	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1031488	chr8:114382671-114419106	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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