The 2.0 version of rSNPBase

Variant report

Variant rs182293900
Chromosome Location chr5:58397451-58397452
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58391800-58398800 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr5:58392000-58398400 Weak transcription Left Ventricle heart
3 chr5:58392000-58400400 Weak transcription Duodenum Mucosa Duodenum
4 chr5:58392000-58400600 Weak transcription Stomach Smooth Muscle stomach
5 chr5:58392400-58399200 Weak transcription Small Intestine intestine
6 chr5:58392400-58400400 Weak transcription Fetal Stomach stomach
7 chr5:58393400-58398400 Weak transcription Fetal Heart heart
8 chr5:58393600-58398400 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr5:58393800-58398600 Weak transcription Colon Smooth Muscle Colon
10 chr5:58393800-58398600 Weak transcription Fetal Lung lung
11 chr5:58393800-58399200 Weak transcription Rectal Smooth Muscle rectum
12 chr5:58394600-58397600 Enhancers Primary T helper memory cells from peripheral blood 2 blood
13 chr5:58395400-58400400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr5:58395400-58400600 Weak transcription NHLF lung
15 chr5:58395600-58399000 Weak transcription Fetal Thymus thymus
16 chr5:58395600-58403600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:58395800-58399000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:58395800-58400600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
19 chr5:58395800-58400600 Weak transcription NHEK skin
20 chr5:58395800-58403800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr5:58396000-58399000 Genic enhancers A549 lung
22 chr5:58396000-58399600 Weak transcription Psoas Muscle Psoas
23 chr5:58396000-58400400 Weak transcription Muscle Satellite Cultured Cells --
24 chr5:58396000-58400400 Weak transcription Osteobl bone
25 chr5:58396000-58400600 Weak transcription Placenta Amnion Placenta Amnion
26 chr5:58396000-58402200 Enhancers Primary T helper 17 cells PMA-I stimulated --
27 chr5:58396200-58398800 Weak transcription Primary hematopoietic stem cells short term culture blood
28 chr5:58396200-58400400 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr5:58396200-58400800 Weak transcription Stomach Mucosa stomach
30 chr5:58396200-58420000 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr5:58396400-58398800 Weak transcription Fetal Intestine Small intestine
32 chr5:58396400-58400400 Weak transcription Primary T helper cells PMA-I stimulated --
33 chr5:58396400-58400400 Weak transcription Primary T killer naive cells fromperipheralblood blood
34 chr5:58396400-58400600 Weak transcription Thymus Thymus
35 chr5:58396800-58398600 Weak transcription Primary T cells from cord blood blood
36 chr5:58396800-58400400 Weak transcription Primary T helper naive cells from peripheral blood blood
37 chr5:58396800-58400600 Weak transcription Primary T helper cells fromperipheralblood blood
38 chr5:58397000-58400200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
39 chr5:58397200-58403600 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr5:58397400-58398400 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015