Variant report

Variant	rs182301889
Chromosome Location	chr11:57887540-57887541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:57887499-57887549	ECC-1	luminal epithelium:	n/a
2	chr11:57887499-57887549	SK-N-SH	brain:	n/a
3	chr11:57887499-57887549	HMEC	breast:	n/a
4	chr11:57887499-57887549	H1-hESC	embryonic stem cell:	embryo
5	chr11:57887499-57887549	SAEC	small airway:	n/a
6	chr11:57887499-57887549	GM12878	blood:	n/a
7	chr11:57887499-57887549	MCF-7	breast:	n/a
8	chr11:57887499-57887549	GM06990	blood:	n/a
9	chr11:57887499-57887549	GM12891	blood:	n/a
10	chr11:57887499-57887549	NH-A	brain:	n/a
11	chr11:57887499-57887549	AoSMC	blood vessel:	n/a
12	chr11:57887499-57887549	AG09309	skin:	n/a
13	chr11:57887499-57887549	HPAEpiC	pulmonary alveolar:	n/a
14	chr11:57887499-57887549	AG04450	lung:	fetal
15	chr11:57887499-57887549	SK-N-MC	brain:	n/a
16	chr11:57887499-57887549	LNCaP	prostate:	n/a
17	chr11:57887499-57887549	Hela-S3	cervix:	n/a
18	chr11:57887499-57887549	SK-N-SH_RA	brain:	n/a
19	chr11:57887499-57887549	HCPEpiC	choroid plexus:	n/a
20	chr11:57887499-57887549	HCT-116	colon:	n/a
21	chr11:57887499-57887549	Caco-2	colon:	n/a
22	chr11:57887499-57887549	BE2_C	brain:	n/a
23	chr11:57887499-57887549	CMK	blood:	n/a
24	chr11:57887499-57887549	GM19239	blood:	n/a
25	chr11:57887499-57887549	HCF	heart:	n/a
26	chr11:57887499-57887549	PANC-1	pancreas:	n/a
27	chr11:57887499-57887549	HRE	kidney:	n/a
28	chr11:57887499-57887549	PFSK-1	brain:	n/a
29	chr11:57887499-57887549	IMR90	lung:	fetal
30	chr11:57887499-57887549	HIPEpiC	eye:	n/a
31	chr11:57887499-57887549	HAEpiC	amniotic membrane:	n/a
32	chr11:57887499-57887549	K562	blood:	n/a
33	chr11:57887499-57887549	ovcar-3	ovarian:	n/a
34	chr11:57887499-57887549	NHBE	bronchial:	n/a
35	chr11:57887499-57887549	A549	lung:	n/a
36	chr11:57887499-57887549	MCF10A-Er-Src	breast:	n/a
37	chr11:57887499-57887549	AG04449	skin:	fetal
38	chr11:57887499-57887549	ProgFib	skin:	n/a
39	chr11:57887499-57887549	Hepatocyte	liver:	n/a
40	chr11:57887499-57887549	AG10803	skin:	n/a
41	chr11:57887499-57887549	PrEC	prostate:	n/a
42	chr11:57887499-57887549	AG09319	gingival:	n/a
43	chr11:57887499-57887549	HUVEC	blood vessel:	n/a
44	chr11:57887499-57887549	HL-60	blood:	n/a
45	chr11:57887499-57887549	NHDF-neo	bronchial:	n/a
46	chr11:57887499-57887549	HRPEpiC	eye:	n/a
47	chr11:57887499-57887549	HepG2	liver:	n/a
48	chr11:57887499-57887549	RPTEC	kidney:	n/a
49	chr11:57887499-57887549	BJ	skin:	n/a
50	chr11:57887499-57887549	HRCEpiC	kidney:	n/a

No data

Variant related genes	Relation type
OR9I1	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv832166	chr11:57852031-58006189	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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