Variant report

Variant	rs1823102
Chromosome Location	chr7:129213857-129213858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129210983..129214247-chr7:129215750..129217640,3	K562	blood:
2	chr7:129212889..129217763-chr7:129247804..129250930,5	K562	blood:
3	chr7:129212812..129216194-chr7:129221295..129224141,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1624261	0.90[EUR][1000 genomes]
rs690748	0.92[EUR][1000 genomes]
rs692489	0.93[EUR][1000 genomes]
rs754385	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129198600-129216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:129209800-129214000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:129209800-129214200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:129209800-129214200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr7:129209800-129214200	Weak transcription	Stomach Mucosa	stomach
6	chr7:129209800-129214200	Weak transcription	HSMM	muscle
7	chr7:129209800-129214200	Weak transcription	HSMMtube	muscle
8	chr7:129210400-129214200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:129210400-129214200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:129210400-129214200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:129210400-129214200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:129210400-129214200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:129210400-129214200	Weak transcription	NHEK	skin
14	chr7:129210400-129214200	Weak transcription	NHLF	lung
15	chr7:129210400-129214200	Weak transcription	Osteobl	bone
16	chr7:129210600-129214200	Weak transcription	NHDF-Ad	bronchial
17	chr7:129211400-129214400	Weak transcription	A549	lung
18	chr7:129212400-129214200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:129213800-129214000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:129213800-129215000	Enhancers	Fetal Muscle Trunk	muscle
21	chr7:129213800-129215000	Enhancers	Fetal Muscle Leg	muscle

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