Variant report

Variant	rs182401604
Chromosome Location	chr22:32806802-32806803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:32806138-32806964	GM12878	blood:	n/a	n/a
2	POLR2A	chr22:32806729-32807121	GM12891	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:32806505..32810377-chr22:32871743..32874140,3	K562	blood:
2	chr22:32802183..32805062-chr22:32805761..32809013,3	MCF-7	breast:
3	chr22:32806637..32808324-chr22:32870497..32872790,2	MCF-7	breast:
4	chr22:32801191..32803610-chr22:32806296..32808272,2	K562	blood:
5	chr22:32806622..32809672-chr22:32869373..32872144,4	MCF-7	breast:

No data

Variant related genes	Relation type
RTCB	TF binding region
ENSG00000100220	Chromatin interaction
ENSG00000100225	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1066118	chr22:32779078-32815334	Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32782800-32807200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:32794200-32807400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr22:32804200-32807000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32804200-32807600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr22:32804600-32807400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:32804800-32807000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:32804800-32807000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr22:32805000-32807000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:32805600-32807000	Enhancers	Stomach Mucosa	stomach
10	chr22:32806000-32807000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr22:32806000-32807000	Enhancers	Primary B cells from peripheral blood	blood
12	chr22:32806000-32807000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr22:32806000-32807000	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr22:32806000-32807200	Enhancers	Pancreas	Pancrea
15	chr22:32806000-32807400	Enhancers	Spleen	Spleen
16	chr22:32806200-32807000	Enhancers	Primary hematopoietic stem cells	blood
17	chr22:32806200-32807000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr22:32806200-32807000	Enhancers	Fetal Heart	heart
19	chr22:32806200-32807000	Genic enhancers	Fetal Lung	lung
20	chr22:32806200-32807000	Genic enhancers	Fetal Muscle Leg	muscle
21	chr22:32806200-32807000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr22:32806200-32807000	Enhancers	Thymus	Thymus
23	chr22:32806200-32807000	Flanking Active TSS	HepG2	liver
24	chr22:32806200-32807000	Enhancers	Osteobl	bone
25	chr22:32806200-32807200	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr22:32806200-32807200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr22:32806200-32807200	Flanking Active TSS	GM12878-XiMat	blood
28	chr22:32806200-32807400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
29	chr22:32806200-32807400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr22:32806200-32807400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr22:32806200-32807400	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr22:32806200-32807400	Enhancers	Small Intestine	intestine
33	chr22:32806200-32807400	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr22:32806200-32807600	Flanking Active TSS	Brain Substantia Nigra	brain
35	chr22:32806200-32807600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr22:32806200-32807800	Flanking Active TSS	Duodenum Mucosa	Duodenum
37	chr22:32806400-32807000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr22:32806400-32807000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr22:32806400-32807000	Enhancers	Fetal Stomach	stomach
40	chr22:32806400-32807000	Enhancers	Left Ventricle	heart
41	chr22:32806400-32807000	Enhancers	HSMMtube	muscle
42	chr22:32806400-32807200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
43	chr22:32806400-32807200	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr22:32806400-32807200	Enhancers	Gastric	stomach
45	chr22:32806400-32807200	Flanking Active TSS	Rectal Smooth Muscle	rectum
46	chr22:32806400-32807400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr22:32806400-32807400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr22:32806400-32807400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr22:32806400-32807600	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr22:32806400-32807800	Flanking Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links