Variant report

Variant	rs182421940
Chromosome Location	chr21:39868024-39868025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39866030..39869325-chr21:39869672..39873977,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157554	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1064436	chr21:39846571-39875576	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1796335	chr21:39866997-39868968	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39860400-39879000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:39862000-39872200	Weak transcription	Gastric	stomach
3	chr21:39862000-39877400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr21:39862200-39871200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:39862600-39869400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr21:39865600-39868400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr21:39865600-39868400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr21:39865800-39868400	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr21:39865800-39868400	Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr21:39865800-39871000	Active TSS	Adipose Nuclei	Adipose
11	chr21:39866000-39868400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr21:39866200-39868200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr21:39866200-39868400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr21:39866200-39868400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr21:39866200-39870400	Active TSS	Right Atrium	heart
16	chr21:39866200-39870600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr21:39866600-39868400	Active TSS	Left Ventricle	heart
18	chr21:39866600-39868400	Active TSS	Right Ventricle	heart
19	chr21:39866600-39868600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr21:39866600-39870200	Active TSS	Psoas Muscle	Psoas
21	chr21:39866800-39869400	Weak transcription	Aorta	Aorta
22	chr21:39866800-39869400	Weak transcription	Spleen	Spleen
23	chr21:39866800-39870400	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr21:39866800-39870400	Active TSS	Fetal Muscle Leg	muscle
25	chr21:39866800-39875200	Weak transcription	HMEC	breast
26	chr21:39867000-39869200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr21:39867000-39869400	Active TSS	Fetal Thymus	thymus
28	chr21:39867000-39869600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr21:39867000-39870400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr21:39867000-39878800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr21:39867200-39868800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr21:39867200-39870400	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr21:39867200-39871400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr21:39867200-39877200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr21:39867400-39868400	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
36	chr21:39867400-39868600	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr21:39867400-39869200	Weak transcription	Fetal Kidney	kidney
38	chr21:39867600-39868200	Active TSS	Duodenum Mucosa	Duodenum
39	chr21:39867600-39869200	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr21:39867600-39870000	Active TSS	Brain Anterior Caudate	brain
41	chr21:39867600-39870200	Active TSS	Fetal Stomach	stomach
42	chr21:39867800-39869000	Weak transcription	Liver	Liver
43	chr21:39867800-39869200	Weak transcription	Ovary	ovary
44	chr21:39867800-39869200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr21:39867800-39870400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr21:39867800-39870600	Active TSS	HUVEC	blood vessel
47	chr21:39868000-39868200	Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr21:39868000-39869200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr21:39868000-39869200	Weak transcription	Placenta	Placenta
50	chr21:39868000-39869200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links