Variant report

Variant	rs1824355
Chromosome Location	chr15:31750731-31750732
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31748477..31753108-chr15:31776889..31783172,7	MCF-7	breast:
2	chr15:31731861..31735385-chr15:31748681..31751856,6	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11629536	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv9233	chr15:31749686-31752999	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31747000-31750800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:31748000-31751000	Weak transcription	Primary T cells from cord blood	blood
3	chr15:31748000-31751000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:31748200-31750800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr15:31748200-31750800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:31748200-31750800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:31748200-31751000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:31748200-31751000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:31748400-31751800	Enhancers	A549	lung
10	chr15:31748600-31751600	Enhancers	Esophagus	oesophagus
11	chr15:31748600-31751800	Enhancers	NHEK	skin
12	chr15:31748600-31752000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:31748800-31750800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr15:31748800-31751000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:31748800-31751000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr15:31748800-31751200	Enhancers	Adipose Nuclei	Adipose
17	chr15:31748800-31751400	Enhancers	HSMM	muscle
18	chr15:31748800-31751400	Enhancers	HSMMtube	muscle
19	chr15:31749000-31751800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:31749200-31751400	Enhancers	NH-A	brain
21	chr15:31749200-31752000	Enhancers	HMEC	breast
22	chr15:31749200-31753200	Weak transcription	Left Ventricle	heart
23	chr15:31749200-31764000	Weak transcription	Right Atrium	heart
24	chr15:31749400-31751800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:31749600-31750800	Weak transcription	Fetal Heart	heart
26	chr15:31749600-31751200	Enhancers	Primary B cells from cord blood	blood
27	chr15:31749600-31753200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr15:31749600-31753600	Enhancers	Primary B cells from peripheral blood	blood
29	chr15:31749800-31751000	Weak transcription	Colonic Mucosa	Colon
30	chr15:31749800-31751400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:31749800-31751400	Enhancers	NHDF-Ad	bronchial
32	chr15:31749800-31751800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr15:31749800-31751800	Enhancers	Osteobl	bone
34	chr15:31749800-31752200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:31750000-31751400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr15:31750000-31751400	Enhancers	Fetal Thymus	thymus
37	chr15:31750000-31751600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr15:31750200-31751400	Enhancers	Spleen	Spleen
39	chr15:31750200-31751800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:31750200-31753800	Weak transcription	Right Ventricle	heart
41	chr15:31750400-31751000	Enhancers	Duodenum Mucosa	Duodenum
42	chr15:31750400-31751000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:31750400-31752000	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr15:31750400-31754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:31750400-31755000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:31750600-31751000	Enhancers	GM12878-XiMat	blood
47	chr15:31750600-31751000	Weak transcription	NHLF	lung

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