Variant report

Variant	rs182445640
Chromosome Location	chr21:16588933-16588934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16249191..16252092-chr21:16587437..16590052,2	MCF-7	breast:
2	chr21:16586904..16589804-chr21:16590773..16592275,2	K562	blood:
3	chr21:16421751..16443998-chr21:16557859..16589610,273	MCF-7	breast:
4	chr21:16586940..16589372-chr21:16591214..16594501,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction
ENSG00000236471	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv913413	chr21:16537728-16621859	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3454967	chr21:16586481-16591979	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1839906	chr21:16587118-16589135	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv587051	chr21:16587477-16589135	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv32772	chr21:16587490-16592163	Weak transcription Enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3454965	chr21:16587606-16591454	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3454968	chr21:16588025-16591737	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3454962	chr21:16588244-16591556	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv819831	chr21:16588272-16591913	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3454961	chr21:16588300-16591525	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3454966	chr21:16588309-16591546	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3454963	chr21:16588314-16591477	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3327555	chr21:16588340-16591472	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv820919	chr21:16588354-16590049	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv828822	chr21:16588354-16590049	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv828823	chr21:16588354-16591163	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv587052	chr21:16588359-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv992011	chr21:16588378-16591451	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	nsv498975	chr21:16588378-16591455	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3454969	chr21:16588379-16591455	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv1006098	chr21:16588380-16591452	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv1711394	chr21:16588380-16591454	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	esv19380	chr21:16588393-16589894	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	esv16351	chr21:16588393-16591163	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv587054	chr21:16588414-16588972	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	nsv587055	chr21:16588414-16589029	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv587056	chr21:16588414-16589030	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	nsv587057	chr21:16588414-16589084	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	nsv587058	chr21:16588414-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv1837138	chr21:16588414-16593184	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	nsv587059	chr21:16588414-16600408	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	nsv587060	chr21:16588415-16589029	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	nsv587061	chr21:16588415-16589030	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	nsv587062	chr21:16588415-16589084	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	nsv587063	chr21:16588415-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv514948	chr21:16588429-16589908	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv587064	chr21:16588471-16589029	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv587065	chr21:16588471-16589030	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv587066	chr21:16588471-16589084	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv587067	chr21:16588471-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv587068	chr21:16588472-16589029	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv587069	chr21:16588472-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
44	nsv587070	chr21:16588522-16589029	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
45	nsv587071	chr21:16588522-16589084	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
46	nsv587072	chr21:16588522-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
47	nsv587073	chr21:16588523-16589135	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
48	nsv828824	chr21:16588560-16590049	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
49	nsv587074	chr21:16588661-16589135	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
50	nsv587075	chr21:16588680-16589135	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16585400-16592000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16585600-16591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16586000-16591400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr21:16586400-16592400	Weak transcription	Liver	Liver
5	chr21:16588600-16591400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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