Variant report

Variant	rs182446679
Chromosome Location	chr14:25365884-25365885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25358400-25369800	Weak transcription	HSMM	muscle
2	chr14:25359200-25369000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:25360600-25369200	Weak transcription	Fetal Lung	lung
4	chr14:25362200-25369400	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:25362400-25378400	Weak transcription	Lung	lung
6	chr14:25363400-25366000	Enhancers	Brain Substantia Nigra	brain
7	chr14:25364000-25367400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr14:25364400-25366200	Enhancers	Fetal Heart	heart
9	chr14:25364600-25366200	Enhancers	Pancreas	Pancrea
10	chr14:25364600-25367000	Weak transcription	Brain Angular Gyrus	brain
11	chr14:25364600-25372400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:25364800-25367200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:25364800-25369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:25364800-25370000	Weak transcription	Right Atrium	heart
15	chr14:25364800-25379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:25365000-25369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:25365000-25369400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr14:25365000-25369400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr14:25365000-25369600	Weak transcription	Colon Smooth Muscle	Colon
20	chr14:25365200-25366800	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:25365400-25367000	Weak transcription	NHDF-Ad	bronchial
22	chr14:25365400-25369000	Weak transcription	Right Ventricle	heart
23	chr14:25365400-25369400	Weak transcription	Brain Anterior Caudate	brain
24	chr14:25365600-25366000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:25365800-25366200	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links