Variant report

Variant	rs1824814
Chromosome Location	chr15:39757653-39757654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39751402..39753741-chr15:39756620..39758382,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61461459	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39740000-39759400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:39753600-39758000	Weak transcription	K562	blood
3	chr15:39753600-39765200	Weak transcription	Pancreas	Pancrea
4	chr15:39754200-39758000	Weak transcription	Fetal Lung	lung
5	chr15:39754200-39758000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:39754400-39758000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:39754600-39758000	Weak transcription	Ovary	ovary
8	chr15:39754600-39759200	Weak transcription	Spleen	Spleen
9	chr15:39754600-39764600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:39754800-39763400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:39755200-39757800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr15:39755200-39758000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:39755200-39758000	Weak transcription	Adipose Nuclei	Adipose
14	chr15:39755400-39757800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:39755800-39758200	Weak transcription	Osteobl	bone
16	chr15:39755800-39759400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:39756000-39759800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr15:39756000-39760200	Weak transcription	HUVEC	blood vessel
19	chr15:39757400-39760000	Enhancers	NHDF-Ad	bronchial
20	chr15:39757400-39761200	Enhancers	Fetal Stomach	stomach
21	chr15:39757600-39757800	Flanking Active TSS	NHLF	lung
22	chr15:39757600-39758000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:39757600-39758200	Enhancers	Right Atrium	heart
24	chr15:39757600-39758600	Enhancers	Colon Smooth Muscle	Colon
25	chr15:39757600-39760200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr15:39757600-39761200	Enhancers	Fetal Muscle Leg	muscle

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