Variant report

Variant	rs182531617
Chromosome Location	chr3:78990446-78990447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:78989798-78990571	PFSK-1	brain:	n/a	n/a
2	RCOR1	chr3:78990353-78991709	IMR90	lung:	n/a	n/a
3	FOS	chr3:78990390-78991169	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RN7SL751P	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv966945	chr3:78990076-78992480	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78963200-78991000	Weak transcription	Fetal Brain Male	brain
2	chr3:78967200-79000600	Weak transcription	Fetal Kidney	kidney
3	chr3:78969000-78990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:78969000-78991000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:78969600-79000600	Weak transcription	HepG2	liver
6	chr3:78970400-78991000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:78977200-78990800	Weak transcription	Psoas Muscle	Psoas
8	chr3:78978400-78992200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:78978800-78990800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:78981600-78991600	Weak transcription	Fetal Heart	heart
11	chr3:78982400-79001800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:78986000-78990600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:78986000-78990800	Weak transcription	NHLF	lung
14	chr3:78986200-78990800	Weak transcription	Primary T cells from cord blood	blood
15	chr3:78986800-78992200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:78988000-78990600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr3:78988000-78991000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:78988000-78993600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:78988000-79002400	Weak transcription	Aorta	Aorta
20	chr3:78988200-78990800	Weak transcription	Fetal Stomach	stomach
21	chr3:78988200-78992800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:78988400-78990800	Weak transcription	Fetal Lung	lung
23	chr3:78988400-78991200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:78988400-78991400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:78988400-78992400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr3:78989200-78991000	Enhancers	Colon Smooth Muscle	Colon
27	chr3:78989600-78991000	Enhancers	Rectal Smooth Muscle	rectum
28	chr3:78989600-78991600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr3:78990000-78991600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr3:78990200-78991400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:78990200-78991600	Enhancers	Osteobl	bone
32	chr3:78990400-78991400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:78990400-78991400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:78990400-78991400	Enhancers	NHDF-Ad	bronchial
35	chr3:78990400-78991600	Enhancers	NHEK	skin
36	chr3:78990400-78992000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links