Variant report

Variant	rs182564787
Chromosome Location	chr11:75380351-75380352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:75378784-75380454	H1-neurons	neurons:	n/a	n/a
2	SUZ12	chr11:75378325-75380694	NT2-D1	testis:	n/a	n/a
3	TAF1	chr11:75379381-75380361	H1-neurons	neurons:	n/a	n/a
4	ZNF263	chr11:75379225-75380465	HEK293-T-REx	kidney:	n/a	chr11:75379555-75379564 chr11:75380260-75380269
5	MXI1	chr11:75377552-75380555	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr11:75378784-75380413	H1-neurons	neurons:	n/a	n/a
7	REST	chr11:75375965-75380745	H1-neurons	neurons:	n/a	chr11:75379581-75379590 chr11:75378441-75378454 chr11:75380239-75380252 chr11:75379555-75379568

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MOGAT2-4	chr11:75379481-75382008	NONHSAT023118

Variant related genes	Relation type
MAP6	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv3428029	chr11:75377804-75381602	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75376600-75380600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:75377800-75380400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr11:75378000-75380400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
4	chr11:75378000-75380400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
5	chr11:75378000-75380400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:75378000-75380400	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr11:75378200-75380400	Active TSS	Colon Smooth Muscle	Colon
8	chr11:75378200-75380800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr11:75378400-75380400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:75378400-75380400	Active TSS	Brain Substantia Nigra	brain
11	chr11:75378400-75380600	Active TSS	Fetal Brain Female	brain
12	chr11:75379200-75380400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
13	chr11:75379400-75380400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
14	chr11:75379400-75380400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
15	chr11:75379400-75380400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr11:75379400-75380400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
17	chr11:75379400-75380400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
18	chr11:75379400-75380600	Enhancers	Fetal Heart	heart
19	chr11:75379800-75380400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:75379800-75380400	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
21	chr11:75379800-75380400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
22	chr11:75379800-75380400	Bivalent Enhancer	Placenta	Placenta
23	chr11:75379800-75380400	Bivalent Enhancer	Fetal Thymus	thymus
24	chr11:75379800-75380600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:75380000-75380400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:75380000-75380400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
27	chr11:75380000-75380400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
28	chr11:75380000-75380400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:75380000-75380400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
30	chr11:75380000-75380400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
31	chr11:75380000-75380600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr11:75380000-75380600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:75380200-75380400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr11:75380200-75380400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:75380200-75380400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
36	chr11:75380200-75380400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
37	chr11:75380200-75380400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:75380200-75380400	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:75380200-75380400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:75380200-75380400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:75380200-75380400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:75380200-75380400	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr11:75380200-75380400	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr11:75380200-75380400	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr11:75380200-75380400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr11:75380200-75380400	Flanking Active TSS	Fetal Brain Male	brain
47	chr11:75380200-75380400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
48	chr11:75380200-75380400	Bivalent Enhancer	Fetal Intestine Small	intestine
49	chr11:75380200-75380400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
50	chr11:75380200-75380400	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links