Variant report
| Variant | rs1826383 |
|---|---|
| Chromosome Location | chr12:40898745-40898746 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1444214 | 0.84[AFR][1000 genomes] |
| rs1444217 | 0.81[AFR][1000 genomes] |
| rs1444222 | 0.81[AFR][1000 genomes] |
| rs1492313 | 0.83[AFR][1000 genomes] |
| rs1492322 | 0.81[AFR][1000 genomes] |
| rs2588393 | 0.82[AFR][1000 genomes] |
| rs2588394 | 0.86[AFR][1000 genomes] |
| rs2588401 | 0.83[AFR][1000 genomes] |
| rs2588402 | 0.83[AFR][1000 genomes] |
| rs2588411 | 0.83[AFR][1000 genomes] |
| rs2638862 | 0.83[AFR][1000 genomes] |
| rs2638863 | 0.83[AFR][1000 genomes] |
| rs2638864 | 0.83[AFR][1000 genomes] |
| rs2638865 | 0.83[AFR][1000 genomes] |
| rs2638869 | 0.82[AFR][1000 genomes] |
| rs2638875 | 0.86[AFR][1000 genomes] |
| rs2638883 | 0.81[AFR][1000 genomes] |
| rs2920827 | 0.84[AFR][1000 genomes] |
| rs2933355 | 0.82[AFR][1000 genomes] |
| rs2933356 | 0.83[AFR][1000 genomes] |
| rs2933367 | 0.86[AFR][1000 genomes] |
| rs2933373 | 0.86[AFR][1000 genomes] |
| rs2933376 | 0.84[AFR][1000 genomes] |
| rs719227 | 0.86[AFR][1000 genomes] |
| rs719228 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv3519672 | chr12:40898422-40907859 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40894800-40908600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
