Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10484298	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10872153	0.85[ASN][1000 genomes]
rs11961040	0.92[ASN][1000 genomes]
rs12194183	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13211542	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1501474	0.85[ASN][1000 genomes]
rs1967194	0.85[ASN][1000 genomes]
rs2062663	0.85[ASN][1000 genomes]
rs2088870	0.85[ASN][1000 genomes]
rs4946273	0.82[CHD][hapmap];0.85[ASN][1000 genomes]
rs9285426	0.85[ASN][1000 genomes]
rs9320616	0.85[ASN][1000 genomes]
rs9320617	0.87[ASN][1000 genomes]
rs9374674	0.85[ASN][1000 genomes]
rs9387491	0.84[CHB][hapmap]
rs9401019	0.85[ASN][1000 genomes]
rs9401023	0.85[ASN][1000 genomes]
rs9401025	0.89[ASN][1000 genomes]
rs9489238	0.80[CHD][hapmap];0.85[ASN][1000 genomes]
rs9765895	0.85[ASN][1000 genomes]
rs9767060	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532050	chr6:117528154-118203005	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1827327	MCM9	cis	parietal	SCAN
rs1827327	DCBLD1	cis	multi-tissue	Pritchard
rs1827327	FRK	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:117940400-117945200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:117943600-117951400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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