Variant report

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1019571	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1022099	0.80[EUR][1000 genomes]
rs1027913	0.86[EUR][1000 genomes]
rs10775342	0.82[EUR][1000 genomes]
rs12709025	0.83[EUR][1000 genomes]
rs12925044	0.82[EUR][1000 genomes]
rs1580380	0.80[EUR][1000 genomes]
rs1582588	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1593112	0.82[EUR][1000 genomes]
rs1610077	0.82[EUR][1000 genomes]
rs1813437	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1820228	0.82[EUR][1000 genomes]
rs1820229	0.82[EUR][1000 genomes]
rs1828344	0.88[EUR][1000 genomes]
rs1834058	0.83[EUR][1000 genomes]
rs2036805	0.82[EUR][1000 genomes]
rs2036806	0.81[EUR][1000 genomes]
rs2406779	0.86[EUR][1000 genomes]
rs34843420	0.88[EUR][1000 genomes]
rs3958621	0.83[EUR][1000 genomes]
rs4146209	0.86[EUR][1000 genomes]
rs4785028	0.84[EUR][1000 genomes]
rs4785029	0.83[EUR][1000 genomes]
rs4785034	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6500031	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6500033	0.86[EUR][1000 genomes]
rs6500035	0.82[EUR][1000 genomes]
rs7185383	0.80[EUR][1000 genomes]
rs7195264	0.81[EUR][1000 genomes]
rs7198374	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7198887	0.81[EUR][1000 genomes]
rs7201230	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7202206	0.86[EUR][1000 genomes]
rs7202693	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7204255	0.81[EUR][1000 genomes]
rs8043584	0.85[EUR][1000 genomes]
rs8051036	0.81[EUR][1000 genomes]
rs9927205	0.86[EUR][1000 genomes]
rs9927985	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833249	chr16:59282950-59461023	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv906745	chr16:59323025-59408342	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv906746	chr16:59323025-59423982	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv977885	chr16:59391944-59403123	Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59400200-59401600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr16:59400600-59401600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:59400600-59401600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr16:59400600-59404600	Weak transcription	A549	lung

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