Variant report

Variant	rs182861095
Chromosome Location	chr10:50002294-50002295
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49986976..49988548-chr10:50000055..50002559,2	MCF-7	breast:
2	chr10:49998728..50000919-chr10:50001573..50004326,2	K562	blood:
3	chr10:49995916..49998699-chr10:49999856..50002398,4	K562	blood:
4	chr10:50000720..50003091-chr10:50019887..50021986,2	MCF-7	breast:
5	chr10:49998728..50000670-chr10:50000841..50003073,2	K562	blood:
6	chr10:50001590..50003527-chr10:50010221..50013133,2	MCF-7	breast:
7	chr10:50001268..50003610-chr10:50006671..50009349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3387538	chr10:50002236-50002677	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49967800-50006800	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:49981400-50007200	Strong transcription	Primary B cells from cord blood	blood
3	chr10:49982600-50006800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:49992800-50005200	Strong transcription	Primary hematopoietic stem cells	blood
5	chr10:49993800-50005600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:49996600-50005400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:49999200-50005600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:49999200-50006200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:49999400-50003400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:49999600-50003000	Enhancers	Left Ventricle	heart
11	chr10:49999800-50003000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:49999800-50003200	Enhancers	HMEC	breast
13	chr10:50000000-50003000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:50000000-50003200	Enhancers	NHEK	skin
15	chr10:50000000-50008400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:50000400-50008400	Weak transcription	Colonic Mucosa	Colon
17	chr10:50001000-50003800	Weak transcription	Lung	lung
18	chr10:50001000-50008200	Weak transcription	Fetal Thymus	thymus
19	chr10:50001000-50012800	Weak transcription	Right Ventricle	heart
20	chr10:50001200-50005600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:50001200-50009400	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:50001400-50007600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:50001600-50008200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr10:50002200-50002400	Enhancers	Esophagus	oesophagus
25	chr10:50002200-50002400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:50002200-50003000	Genic enhancers	Spleen	Spleen
27	chr10:50002200-50003800	Weak transcription	GM12878-XiMat	blood

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