Variant report

Variant	rs182890995
Chromosome Location	chr22:29756650-29756651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29701853..29704489-chr22:29754340..29756996,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185340	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv834171	chr22:29626402-29829844	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv529742	chr22:29677909-30274388	Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv966099	chr22:29755726-29762172	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv914961	chr22:29755888-29817506	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
6	nsv914962	chr22:29755888-29823768	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29721800-29756800	Strong transcription	Primary T cells from cord blood	blood
2	chr22:29722000-29759200	Strong transcription	Dnd41	blood
3	chr22:29722000-29759800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr22:29722200-29759800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr22:29722400-29756800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr22:29722400-29758400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr22:29722600-29757200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:29722600-29758000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr22:29722600-29758800	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr22:29723000-29758800	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr22:29723000-29765000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr22:29739000-29762800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr22:29739800-29757200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr22:29740600-29759000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr22:29740800-29759000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr22:29741000-29782800	Weak transcription	Hela-S3	cervix
17	chr22:29741800-29757200	Strong transcription	Primary hematopoietic stem cells	blood
18	chr22:29741800-29760200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr22:29742000-29757000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr22:29745000-29765200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr22:29745600-29763400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:29750600-29765200	Weak transcription	NHDF-Ad	bronchial
23	chr22:29750600-29766800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr22:29750800-29760000	Weak transcription	K562	blood
25	chr22:29750800-29764400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr22:29753000-29777600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr22:29754000-29757000	Strong transcription	GM12878-XiMat	blood
28	chr22:29754600-29770400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr22:29754800-29759600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr22:29754800-29765200	Weak transcription	HSMM	muscle
31	chr22:29755000-29759400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr22:29755000-29765200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr22:29755000-29772200	Weak transcription	Aorta	Aorta
34	chr22:29755000-29783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr22:29755200-29765000	Weak transcription	NH-A	brain
36	chr22:29755200-29773800	Weak transcription	Stomach Mucosa	stomach
37	chr22:29755200-29781000	Weak transcription	Fetal Brain Male	brain
38	chr22:29755200-29782800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr22:29755400-29757000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr22:29755400-29759600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr22:29755400-29762000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr22:29755400-29764600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr22:29755400-29765400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr22:29755400-29783600	Weak transcription	Fetal Kidney	kidney
45	chr22:29755600-29758400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr22:29755600-29762000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr22:29755600-29763800	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr22:29755600-29763800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr22:29755600-29771400	Weak transcription	Psoas Muscle	Psoas
50	chr22:29755600-29778600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links