Variant report

Variant	rs183003328
Chromosome Location	chr7:6310501-6310502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6214344..6218044-chr7:6310010..6312416,3	MCF-7	breast:
2	chr7:6304552..6306411-chr7:6307990..6310945,2	MCF-7	breast:
3	chr7:6206063..6207710-chr7:6310368..6312250,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238534	Chromatin interaction
ENSG00000008256	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
2	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
3	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
5	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
7	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
8	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1032987	chr7:6246313-6373054	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv538714	chr7:6246313-6373054	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
15	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv538715	chr7:6308902-6359025	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv1020251	chr7:6309528-6379941	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6299200-6310600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr7:6306800-6310600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:6308400-6310600	Active TSS	GM12878-XiMat	blood
4	chr7:6308800-6310600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:6309000-6310600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:6309000-6310600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:6309000-6310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:6309000-6310600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:6309000-6310600	Weak transcription	Esophagus	oesophagus
10	chr7:6309000-6310600	Weak transcription	Spleen	Spleen
11	chr7:6309200-6310600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:6309400-6310600	Weak transcription	Gastric	stomach
13	chr7:6309400-6310600	Weak transcription	Lung	lung
14	chr7:6309400-6310600	Weak transcription	Pancreas	Pancrea
15	chr7:6309400-6310600	Weak transcription	Right Ventricle	heart
16	chr7:6309400-6310600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr7:6309400-6310600	Weak transcription	Small Intestine	intestine
18	chr7:6309600-6310600	Enhancers	Colon Smooth Muscle	Colon
19	chr7:6309800-6311400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:6309800-6312600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:6310200-6310600	Enhancers	Liver	Liver
22	chr7:6310200-6310600	Enhancers	Stomach Mucosa	stomach
23	chr7:6310200-6310600	Flanking Active TSS	HSMM	muscle
24	chr7:6310200-6310600	Flanking Active TSS	NHLF	lung
25	chr7:6310200-6310800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:6310200-6310800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr7:6310200-6310800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr7:6310200-6310800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:6310200-6310800	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr7:6310200-6311400	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr7:6310200-6311600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:6310200-6311600	Flanking Active TSS	K562	blood
33	chr7:6310200-6312600	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr7:6310400-6310600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:6310400-6310600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
36	chr7:6310400-6310600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
37	chr7:6310400-6310600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
38	chr7:6310400-6310600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr7:6310400-6310600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr7:6310400-6310600	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr7:6310400-6310600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:6310400-6310600	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr7:6310400-6310600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:6310400-6310600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr7:6310400-6310600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr7:6310400-6310600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr7:6310400-6310600	Flanking Active TSS	Brain Angular Gyrus	brain
48	chr7:6310400-6310600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr7:6310400-6310600	Active TSS	Fetal Brain Male	brain
50	chr7:6310400-6310600	Flanking Active TSS	Fetal Heart	heart

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