Variant report

Variant	rs183003445
Chromosome Location	chr7:55862405-55862406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr7:55862234-55862519	K562	blood:	n/a	chr7:55862399-55862410
2	JUND	chr7:55862315-55862516	HepG2	liver:	n/a	chr7:55862363-55862374
3	MYC	chr7:55862243-55862553	MCF10A-Er-Src	breast:	n/a	n/a
4	CTCF	chr7:55862391-55862476	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr7:55862324-55862524	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr7:55862286-55862561	HepG2	liver:	n/a	chr7:55862399-55862410
7	FOSL2	chr7:55862261-55862503	MCF-7	breast:	n/a	chr7:55862362-55862373
8	JUN	chr7:55862191-55862538	Hela-S3	cervix:	n/a	n/a
9	MYC	chr7:55862312-55862554	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr7:55862154-55862607	MCF10A-Er-Src	breast:	n/a	n/a
11	JUND	chr7:55862255-55862574	HCT-116	colon:	n/a	chr7:55862363-55862374
12	RCOR1	chr7:55862303-55862513	Hela-S3	cervix:	n/a	n/a
13	RAD21	chr7:55862330-55862502	Hela-S3	cervix:	n/a	n/a
14	FOSL1	chr7:55862268-55862665	HCT-116	colon:	n/a	n/a
15	MAFK	chr7:55862297-55862546	Hela-S3	cervix:	n/a	n/a
16	STAT3	chr7:55862297-55862620	MCF10A-Er-Src	breast:	n/a	n/a
17	EP300	chr7:55862298-55862507	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr7:55862360-55862510	SAEC	small airway:	n/a	n/a
19	POLR2A	chr7:55862241-55862430	HCT-116	colon:	n/a	n/a
20	FOSL1	chr7:55862233-55862566	HCT-116	colon:	n/a	n/a
21	CTCF	chr7:55862340-55862490	SAEC	small airway:	n/a	n/a
22	FOSL2	chr7:55862262-55862557	HepG2	liver:	n/a	chr7:55862362-55862373
23	CEBPB	chr7:55862243-55862570	Hela-S3	cervix:	n/a	chr7:55862399-55862410
24	STAT3	chr7:55862288-55862568	MCF10A-Er-Src	breast:	n/a	n/a
25	MAX	chr7:55862391-55862541	Hela-S3	cervix:	n/a	n/a
26	FOS	chr7:55862187-55862560	MCF10A-Er-Src	breast:	n/a	n/a
27	CEBPB	chr7:55862268-55862679	HCT-116	colon:	n/a	chr7:55862399-55862410
28	CTCF	chr7:55862260-55862410	HMEC	breast:	n/a	n/a
29	JUND	chr7:55862292-55862508	HepG2	liver:	n/a	chr7:55862363-55862374
30	MAFK	chr7:55862299-55862520	HepG2	liver:	n/a	n/a
31	CEBPB	chr7:55862294-55862497	HepG2	liver:	n/a	chr7:55862399-55862410
32	CTCF	chr7:55862360-55862510	HepG2	liver:	n/a	n/a
33	CHD2	chr7:55862308-55862515	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr7:55862315-55862530	ECC-1	luminal epithelium:	n/a	chr7:55862399-55862410
35	RFX5	chr7:55862291-55862533	Hela-S3	cervix:	n/a	n/a
36	FOS	chr7:55862282-55862554	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chr7:55862241-55862744	HCT-116	colon:	n/a	chr7:55862399-55862410
38	E2F4	chr7:55862320-55862554	MCF10A-Er-Src	breast:	n/a	n/a
39	CEBPB	chr7:55862358-55862505	IMR90	lung:	n/a	chr7:55862399-55862410
40	JUND	chr7:55862184-55862546	Hela-S3	cervix:	n/a	chr7:55862363-55862374
41	FOS	chr7:55862194-55862557	MCF10A-Er-Src	breast:	n/a	n/a
42	CEBPB	chr7:55862291-55862665	MCF-7	breast:	n/a	chr7:55862399-55862410
43	CEBPB	chr7:55862272-55862668	MCF-7	breast:	n/a	chr7:55862399-55862410
44	FOSL2	chr7:55862155-55862523	HepG2	liver:	n/a	chr7:55862362-55862373
45	CTCF	chr7:55862380-55862530	HEEpiC	esophagus:	n/a	n/a
46	TCF7L2	chr7:55862317-55862517	Hela-S3	cervix:	n/a	n/a
47	MAFF	chr7:55862329-55862495	HepG2	liver:	n/a	n/a
48	JUND	chr7:55862304-55862426	HepG2	liver:	n/a	chr7:55862363-55862374
49	STAT3	chr7:55862270-55862554	MCF10A-Er-Src	breast:	n/a	n/a
50	JUND	chr7:55862334-55862446	K562	blood:	n/a	chr7:55862363-55862374

Variant related genes	Relation type
CICP12	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv427782	chr7:55703073-56010314	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv888063	chr7:55728476-55899496	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv469612	chr7:55752394-55876163	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv482609	chr7:55752394-55876163	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
12	nsv970835	chr7:55816398-55872502	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
14	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
15	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
16	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
17	nsv966928	chr7:55855289-55872502	Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links