Variant report

Variant	rs183028596
Chromosome Location	chr17:33981426-33981427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33979744..33982456-chr17:34047752..34049519,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
2	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv1060890	chr17:33884124-34011034	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv543318	chr17:33884124-34011034	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv960466	chr17:33980992-33984455	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33916800-34001200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:33921000-34024400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:33931000-34040200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:33933000-33997800	Weak transcription	Esophagus	oesophagus
5	chr17:33948800-34010600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr17:33949000-33986400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr17:33949200-34001200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr17:33954200-33982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:33954600-34001800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr17:33954600-34006000	Weak transcription	Stomach Mucosa	stomach
11	chr17:33958200-33983000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:33958200-33992400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr17:33958200-33992400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr17:33960000-34024600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:33960200-33987600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr17:33963400-34001200	Weak transcription	Aorta	Aorta
17	chr17:33966000-34002000	Strong transcription	Primary T cells from cord blood	blood
18	chr17:33968000-33997600	Weak transcription	HSMMtube	muscle
19	chr17:33968000-34055800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr17:33968200-33984600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr17:33968400-33984600	Weak transcription	Fetal Kidney	kidney
22	chr17:33968400-33997800	Weak transcription	Brain Substantia Nigra	brain
23	chr17:33969000-33989800	Weak transcription	Psoas Muscle	Psoas
24	chr17:33969000-34001200	Weak transcription	Right Ventricle	heart
25	chr17:33969200-33985600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr17:33969400-33982400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr17:33969400-34001200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr17:33969600-33985800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr17:33969600-33997600	Weak transcription	Brain Anterior Caudate	brain
30	chr17:33969600-33998600	Weak transcription	Fetal Brain Male	brain
31	chr17:33970000-33995400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr17:33970000-33997800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr17:33970400-33987600	Weak transcription	Fetal Heart	heart
34	chr17:33970400-34001200	Weak transcription	Small Intestine	intestine
35	chr17:33971200-33992000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr17:33971200-33997800	Weak transcription	Colon Smooth Muscle	Colon
37	chr17:33971400-33984600	Weak transcription	Colonic Mucosa	Colon
38	chr17:33972000-33990600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr17:33972000-33998800	Weak transcription	Ovary	ovary
40	chr17:33974000-33982600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr17:33974400-33992600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr17:33975000-33982000	Strong transcription	Fetal Thymus	thymus
43	chr17:33975000-34025800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr17:33975400-33992800	Strong transcription	Primary B cells from cord blood	blood
45	chr17:33975600-33991400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr17:33976400-33982200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:33976600-33991600	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr17:33976800-33986400	Strong transcription	HUES48 Cell Line	embryonic stem cell
49	chr17:33976800-33988800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr17:33977000-33994600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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