Variant report

Variant	rs183109662
Chromosome Location	chr8:61563658-61563659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:61549271..61552282-chr8:61563024..61565421,3	K562	blood:
2	chr8:61326797..61329744-chr8:61563148..61565858,2	MCF-7	breast:
3	chr8:60909031..60911601-chr8:61562751..61565399,2	K562	blood:
4	chr8:61545345..61549170-chr8:61560322..61564526,3	K562	blood:
5	chr8:61495825..61497744-chr8:61563295..61565578,2	MCF-7	breast:
6	chr8:61563492..61565513-chr8:61620455..61623990,3	MCF-7	breast:
7	chr8:61563289..61565598-chr8:61614731..61616834,3	MCF-7	breast:
8	chr8:61562515..61568989-chr8:61586860..61594946,37	MCF-7	breast:
9	chr8:61563620..61565259-chr8:61566551..61570060,3	K562	blood:
10	chr8:61563470..61565224-chr8:61583333..61585587,2	MCF-7	breast:
11	chr8:61563266..61565580-chr8:61566081..61568561,3	MCF-7	breast:
12	chr8:61559343..61568621-chr8:61588061..61597189,35	MCF-7	breast:
13	chr8:61563378..61566107-chr8:61998856..62000891,3	K562	blood:
14	chr8:61428155..61432658-chr8:61561209..61565927,6	K562	blood:
15	chr8:61552364..61555028-chr8:61563489..61565765,2	MCF-7	breast:
16	chr8:61322849..61326480-chr8:61562995..61566065,5	MCF-7	breast:
17	chr8:61563005..61568398-chr8:61588453..61593214,14	K562	blood:
18	chr8:61428198..61432658-chr8:61562541..61565732,7	K562	blood:
19	chr8:61562433..61567496-chr8:61571905..61575539,5	K562	blood:
20	chr21:43795518..43797652-chr8:61562855..61565743,2	MCF-7	breast:
21	chr8:61377484..61379005-chr8:61563115..61565919,2	K562	blood:
22	chr8:61562616..61568326-chr8:61569044..61575643,11	MCF-7	breast:
23	chr8:61563024..61564810-chr8:61973085..61975241,2	K562	blood:
24	chr8:61562679..61568216-chr8:61588453..61593754,19	K562	blood:
25	chr8:61562599..61565494-chr9:18702295..18704681,2	MCF-7	breast:
26	chr8:61530201..61533148-chr8:61561938..61565788,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CA8-5	chr8:61558738-61564811	NONHSAT126845

No data

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction
ENSG00000104388	Chromatin interaction
ENSG00000251396	Chromatin interaction
ENSG00000254869	Chromatin interaction
ENSG00000255289	Chromatin interaction
ENSG00000228862	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv824657	chr8:61555227-61626758	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv824658	chr8:61561488-61612108	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	esv3370592	chr8:61563423-61565971	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61554200-61564000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:61563000-61564000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:61563000-61565400	Active TSS	Rectal Mucosa Donor 31	rectum
4	chr8:61563200-61563800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:61563200-61563800	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr8:61563200-61565400	Active TSS	Stomach Mucosa	stomach
7	chr8:61563400-61563800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:61563400-61563800	Flanking Active TSS	Fetal Intestine Large	intestine
9	chr8:61563400-61563800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr8:61563400-61563800	Flanking Active TSS	GM12878-XiMat	blood
11	chr8:61563400-61564000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:61563400-61564000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr8:61563400-61564000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:61563400-61564200	Flanking Active TSS	HUVEC	blood vessel
15	chr8:61563400-61565200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr8:61563400-61565200	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr8:61563400-61565200	Active TSS	HMEC	breast
18	chr8:61563400-61565400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr8:61563400-61565400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr8:61563400-61565400	Active TSS	Fetal Brain Female	brain
21	chr8:61563400-61565400	Active TSS	Fetal Intestine Small	intestine
22	chr8:61563400-61565600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:61563400-61565600	Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr8:61563400-61565600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:61563400-61566400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr8:61563400-61566400	Active TSS	Right Atrium	heart
27	chr8:61563400-61566400	Active TSS	HSMMtube	muscle
28	chr8:61563400-61566800	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr8:61563400-61567200	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr8:61563600-61563800	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:61563600-61563800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr8:61563600-61563800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
33	chr8:61563600-61563800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:61563600-61563800	Bivalent Enhancer	Primary B cells from cord blood	blood
35	chr8:61563600-61563800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
36	chr8:61563600-61563800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:61563600-61563800	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr8:61563600-61563800	Flanking Active TSS	Brain Germinal Matrix	brain
39	chr8:61563600-61563800	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr8:61563600-61563800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr8:61563600-61563800	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr8:61563600-61563800	Enhancers	Fetal Brain Male	brain
43	chr8:61563600-61563800	Flanking Active TSS	Fetal Heart	heart
44	chr8:61563600-61563800	Flanking Active TSS	Fetal Kidney	kidney
45	chr8:61563600-61563800	Enhancers	Placenta	Placenta
46	chr8:61563600-61563800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr8:61563600-61563800	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr8:61563600-61563800	Flanking Active TSS	K562	blood
49	chr8:61563600-61563800	Flanking Active TSS	NHLF	lung
50	chr8:61563600-61564000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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