Variant report

Variant	rs183137640
Chromosome Location	chr10:118977334-118977335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118976223..118977870-chr10:118979893..118982882,2	K562	blood:
2	chr10:118975183..118978653-chr10:118979198..118982710,3	MCF-7	breast:
3	chr10:118975747..118977593-chr10:119078147..119080329,46	MCF-7	breast:
4	chr10:118973979..118977978-chr10:119077721..119080771,4	MCF-7	breast:
5	chr10:118975358..118977652-chr10:119078316..119080186,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118975600-118977600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr10:118976000-118977400	Bivalent Enhancer	Fetal Brain Male	brain
3	chr10:118976000-118977600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
4	chr10:118976400-118977400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
5	chr10:118976400-118977400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
6	chr10:118976600-118977600	Flanking Active TSS	Esophagus	oesophagus
7	chr10:118976800-118977600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
8	chr10:118977000-118977400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:118977000-118977400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:118977000-118977400	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr10:118977000-118977400	Bivalent Enhancer	NHEK	skin
12	chr10:118977000-118977600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr10:118977000-118980400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:118977200-118977400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr10:118977200-118977400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr10:118977200-118977400	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:118977200-118977400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:118977200-118977400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
19	chr10:118977200-118977400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:118977200-118977400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:118977200-118977400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:118977200-118977400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:118977200-118977400	Active TSS	Brain Germinal Matrix	brain
24	chr10:118977200-118977400	Enhancers	Ovary	ovary
25	chr10:118977200-118977400	Enhancers	Pancreas	Pancrea
26	chr10:118977200-118977400	Enhancers	A549	lung
27	chr10:118977200-118977400	Bivalent Enhancer	HepG2	liver
28	chr10:118977200-118977600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr10:118977200-118977600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr10:118977200-118977600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:118977200-118977600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr10:118977200-118980600	Weak transcription	HMEC	breast
33	chr10:118977200-118980800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links