Variant report

Variant	rs183139078
Chromosome Location	chr1:76620389-76620390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:76456960..76457802-chr1:76619597..76620478,2	K562	blood:
2	chr1:76619528..76620590-chr1:77591988..77592713,3	MCF-7	breast:
3	chr1:76619799..76620863-chr1:77591812..77592540,5	K562	blood:
4	chr1:76620098..76620620-chr1:76796654..76797328,2	MCF-7	breast:
5	chr1:76619661..76620511-chr1:77549962..77550737,2	MCF-7	breast:
6	chr1:76619553..76620451-chr1:77999109..77999974,2	K562	blood:
7	chr1:76619950..76620589-chr1:78579803..78580325,2	K562	blood:
8	chr1:76619537..76620481-chr1:77608892..77609886,3	K562	blood:
9	chr1:76456960..76458188-chr1:76619791..76620471,4	MCF-7	breast:

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76616400-76623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:76619600-76620400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:76619600-76620400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:76619800-76620600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr1:76619800-76620600	Flanking Active TSS	Brain Cingulate Gyrus	brain
6	chr1:76619800-76620600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:76619800-76620600	Enhancers	Fetal Heart	heart
8	chr1:76619800-76620600	Active TSS	Monocytes-CD14+_RO01746	blood
9	chr1:76619800-76621000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:76620000-76620400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:76620000-76620400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:76620000-76620400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr1:76620000-76620400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr1:76620000-76620400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr1:76620000-76620400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr1:76620000-76620400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr1:76620000-76620400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr1:76620000-76620400	Active TSS	Primary T cells fromperipheralblood	blood
20	chr1:76620000-76620400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:76620000-76620400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr1:76620000-76620400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr1:76620000-76620400	Flanking Active TSS	Brain Angular Gyrus	brain
24	chr1:76620000-76620400	Flanking Active TSS	Brain Substantia Nigra	brain
25	chr1:76620000-76620400	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr1:76620000-76620400	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr1:76620000-76620400	Active TSS	Fetal Brain Male	brain
28	chr1:76620000-76620400	Active TSS	Lung	lung
29	chr1:76620000-76620400	Active TSS	Ovary	ovary
30	chr1:76620000-76620400	Enhancers	Placenta Amnion	Placenta Amnion
31	chr1:76620000-76620400	Flanking Active TSS	Stomach Mucosa	stomach
32	chr1:76620000-76620400	Flanking Active TSS	Dnd41	blood
33	chr1:76620000-76620600	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr1:76620000-76620600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr1:76620000-76620600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr1:76620000-76620600	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr1:76620000-76620600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr1:76620000-76620600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr1:76620000-76620600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr1:76620000-76620600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr1:76620000-76620600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr1:76620000-76620600	Active TSS	Primary T killer memory cells from peripheral blood	blood
43	chr1:76620000-76620600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr1:76620000-76620600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr1:76620000-76620600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:76620000-76620600	Flanking Active TSS	Liver	Liver
47	chr1:76620000-76620600	Flanking Active TSS	Brain Germinal Matrix	brain
48	chr1:76620000-76620600	Active TSS	Fetal Brain Female	brain
49	chr1:76620000-76620600	Flanking Active TSS	Fetal Intestine Large	intestine
50	chr1:76620000-76620600	Flanking Active TSS	Fetal Intestine Small	intestine

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