Variant report

Variant	rs183161609
Chromosome Location	chr9:116112579-116112580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116109902..116113383-chr9:116162345..116166968,8	MCF-7	breast:
2	chr9:116110213..116113414-chr9:116171126..116174421,5	MCF-7	breast:
3	chr9:116111218..116114895-chr9:116159419..116161993,4	MCF-7	breast:
4	chr9:116108846..116117047-chr9:116126327..116140994,30	MCF-7	breast:
5	chr9:116101294..116104058-chr9:116110419..116112658,2	K562	blood:

Variant related genes	Relation type
ENSG00000148225	Chromatin interaction
ENSG00000148229	Chromatin interaction
ENSG00000148218	Chromatin interaction
ENSG00000119431	Chromatin interaction
ENSG00000157653	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv519849	chr9:116111407-116144973	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116111200-116112600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr9:116111200-116112600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr9:116111200-116112600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr9:116111200-116112800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
5	chr9:116111200-116113000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr9:116111200-116113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr9:116111200-116113000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr9:116111400-116112600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:116111400-116112600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
10	chr9:116111400-116112800	Active TSS	Pancreas	Pancrea
11	chr9:116111400-116113600	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr9:116111400-116114000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr9:116111600-116112600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:116111600-116112600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
15	chr9:116111600-116112800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:116111600-116112800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr9:116111800-116112600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:116111800-116112600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:116111800-116112600	Active TSS	Aorta	Aorta
20	chr9:116111800-116112600	Active TSS	Esophagus	oesophagus
21	chr9:116111800-116112600	Active TSS	Left Ventricle	heart
22	chr9:116111800-116113600	Active TSS	Gastric	stomach
23	chr9:116112000-116112600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:116112000-116112600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
25	chr9:116112000-116112600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:116112000-116112600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:116112000-116112600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:116112000-116112600	Flanking Active TSS	Adipose Nuclei	Adipose
29	chr9:116112000-116112600	Flanking Active TSS	Liver	Liver
30	chr9:116112000-116112600	Bivalent Enhancer	Brain Germinal Matrix	brain
31	chr9:116112000-116112600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
32	chr9:116112000-116112600	Flanking Active TSS	Right Atrium	heart
33	chr9:116112000-116112600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
34	chr9:116112000-116113400	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr9:116112000-116113400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:116112000-116114000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
38	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
39	chr9:116112200-116112600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
40	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr9:116112200-116112600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
44	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:116112200-116112600	Flanking Active TSS	Duodenum Mucosa	Duodenum
46	chr9:116112200-116112600	Bivalent Enhancer	Fetal Brain Male	brain
47	chr9:116112200-116112600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr9:116112200-116112600	Flanking Active TSS	Placenta	Placenta
49	chr9:116112200-116112600	Flanking Active TSS	Lung	lung
50	chr9:116112200-116112600	Bivalent Enhancer	Placenta Amnion	Placenta Amnion

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