Variant report

Variant	rs183195605
Chromosome Location	chr6:110427074-110427075
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886535	chr6:110377006-110551463	Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	esv2757188	chr6:110389926-110504680	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2759462	chr6:110389926-110504680	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv1792799	chr6:110411065-110566597	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv886536	chr6:110426046-110502831	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110417200-110438600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:110418200-110436000	Weak transcription	Fetal Brain Male	brain
3	chr6:110418800-110429000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:110418800-110437200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:110419000-110427400	Weak transcription	Fetal Lung	lung
6	chr6:110419000-110428000	Weak transcription	HSMM	muscle
7	chr6:110419000-110431800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:110419000-110449600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:110419000-110461800	Weak transcription	HSMMtube	muscle
10	chr6:110419200-110449600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:110419400-110430800	Weak transcription	Osteobl	bone
12	chr6:110419800-110429800	Strong transcription	Stomach Smooth Muscle	stomach
13	chr6:110419800-110436400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:110420000-110430000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:110420400-110431200	Weak transcription	Fetal Heart	heart
16	chr6:110420600-110435200	Weak transcription	Brain Anterior Caudate	brain
17	chr6:110421200-110430200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:110421200-110433400	Weak transcription	K562	blood
19	chr6:110421400-110430000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:110422800-110428200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:110423200-110427400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:110423200-110427400	Weak transcription	Gastric	stomach
23	chr6:110423200-110429600	Weak transcription	NH-A	brain
24	chr6:110423200-110440800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:110423200-110448400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:110423400-110427800	Weak transcription	HepG2	liver
27	chr6:110423400-110431400	Weak transcription	Fetal Thymus	thymus
28	chr6:110423400-110434000	Weak transcription	HMEC	breast
29	chr6:110423400-110437600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:110423400-110439000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:110423400-110445000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr6:110423400-110450000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:110423400-110459000	Weak transcription	Fetal Stomach	stomach
34	chr6:110423400-110459200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:110423400-110459200	Weak transcription	Aorta	Aorta
36	chr6:110423600-110427800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:110424000-110427400	Weak transcription	Fetal Brain Female	brain
38	chr6:110424000-110427600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:110424200-110427800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr6:110424200-110429800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:110424600-110429400	Weak transcription	Adipose Nuclei	Adipose
42	chr6:110424600-110435200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:110424600-110437800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:110424800-110427200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:110424800-110427400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:110424800-110427400	Weak transcription	NHEK	skin
47	chr6:110424800-110428600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:110424800-110429600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:110424800-110429600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr6:110424800-110429600	Weak transcription	Fetal Muscle Trunk	muscle

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