Variant report

Variant	rs1832195
Chromosome Location	chr10:94268401-94268402
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94266903..94270472-chr10:94333012..94335202,3	K562	blood:
2	chr10:94265816..94268647-chr10:94273130..94275681,2	K562	blood:
3	chr10:94263991..94266958-chr10:94266997..94268631,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17875337	0.85[AMR][1000 genomes]
rs2275729	0.86[CHB][hapmap]
rs34934289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35223317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35426658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45589941	0.85[AMR][1000 genomes]
rs7899695	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv551924	chr10:94212742-94290484	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv551925	chr10:94224165-94288429	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv1802816	chr10:94232247-94294291	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94208400-94276800	Weak transcription	Stomach Mucosa	stomach
2	chr10:94212800-94270400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:94217600-94270200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:94230000-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:94230400-94276400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:94239600-94280400	Weak transcription	Fetal Brain Male	brain
7	chr10:94244000-94303000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:94250000-94272400	Weak transcription	Fetal Brain Female	brain
9	chr10:94250200-94271400	Weak transcription	Brain Angular Gyrus	brain
10	chr10:94250200-94289400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:94250200-94295200	Weak transcription	Pancreas	Pancrea
12	chr10:94250200-94297200	Weak transcription	Brain Germinal Matrix	brain
13	chr10:94250200-94313800	Weak transcription	Brain Substantia Nigra	brain
14	chr10:94250400-94269000	Weak transcription	Thymus	Thymus
15	chr10:94250400-94271200	Weak transcription	K562	blood
16	chr10:94250400-94271400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr10:94250400-94271600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr10:94250400-94272000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:94250400-94301000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr10:94250400-94307400	Weak transcription	Spleen	Spleen
21	chr10:94250800-94271600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:94250800-94276400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:94250800-94276600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr10:94252000-94270000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:94252000-94275000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:94252400-94274800	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr10:94252600-94302200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:94257400-94269600	Strong transcription	Placenta	Placenta
29	chr10:94257400-94272400	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr10:94257600-94289400	Weak transcription	Right Ventricle	heart
31	chr10:94259400-94289000	Weak transcription	NH-A	brain
32	chr10:94259800-94273600	Weak transcription	HMEC	breast
33	chr10:94260000-94296800	Weak transcription	Esophagus	oesophagus
34	chr10:94260200-94268600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:94261200-94269000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:94261600-94269800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:94261600-94270200	Strong transcription	Liver	Liver
38	chr10:94261600-94274800	Strong transcription	Dnd41	blood
39	chr10:94261800-94273000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:94262000-94268800	Weak transcription	Fetal Intestine Small	intestine
41	chr10:94262000-94289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:94262000-94297600	Weak transcription	Psoas Muscle	Psoas
43	chr10:94262000-94307400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:94262400-94269200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:94262400-94270000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr10:94262400-94276800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:94263200-94270000	Strong transcription	Fetal Thymus	thymus
48	chr10:94263800-94270000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr10:94264000-94270000	Strong transcription	HUVEC	blood vessel
50	chr10:94264200-94295000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links