Variant report

Variant	rs183245505
Chromosome Location	chr6:133068422-133068423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133066307..133069069-chr6:133084941..133086907,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271488	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv517934	chr6:133062916-133072650	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3692914	chr6:133067733-133070995	Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133057600-133069200	Weak transcription	GM12878-XiMat	blood
2	chr6:133058400-133070400	Weak transcription	Liver	Liver
3	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
4	chr6:133061600-133072200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:133062600-133070400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:133063600-133072200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:133064200-133072000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:133064200-133083000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:133064600-133070400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr6:133064800-133070200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr6:133064800-133078000	Strong transcription	Primary T cells from cord blood	blood
12	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:133065400-133073800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:133065600-133068800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:133066400-133069000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:133066800-133070400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:133067600-133068800	Enhancers	Placenta	Placenta
18	chr6:133067800-133068800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:133067800-133071600	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
20	chr6:133068000-133069800	Active TSS	Primary hematopoietic stem cells	blood
21	chr6:133068000-133070400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:133068200-133068800	Genic enhancers	Primary B cells from cord blood	blood
23	chr6:133068400-133069000	Genic enhancers	Monocytes-CD14+_RO01746	blood

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