Variant report

Variant	rs183298184
Chromosome Location	chr2:99984838-99984839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:99984624..99988612-chr2:99989549..99993377,4	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv874699	chr2:99898998-100010044	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv524466	chr2:99952086-100031551	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1014604	chr2:99980851-100097884	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1006625	chr2:99984550-100096371	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:99956200-100004800	Weak transcription	Fetal Heart	heart
2	chr2:99957600-99989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:99975400-100006400	Weak transcription	Stomach Mucosa	stomach
4	chr2:99976000-99989600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr2:99976200-100003800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:99976200-100004400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:99976400-99988600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:99976400-100003200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr2:99976600-100002400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr2:99976600-100004800	Strong transcription	Primary B cells from peripheral blood	blood
11	chr2:99976800-99989600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:99977000-99989200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:99977000-99991000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:99977000-99996800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:99977000-100001000	Strong transcription	Primary B cells from cord blood	blood
16	chr2:99977000-100001400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:99977000-100003200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:99977000-100003200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:99977000-100003600	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr2:99977000-100003800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:99977000-100003800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr2:99977200-99989600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:99977200-99991000	Strong transcription	Dnd41	blood
24	chr2:99977200-99996200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:99977600-99997000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr2:99977600-100002200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:99977600-100003600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:99977800-99989800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr2:99977800-99989800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr2:99977800-99989800	Strong transcription	Fetal Intestine Large	intestine
31	chr2:99977800-99996800	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:99978000-99989000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:99978200-99986600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:99978200-99990600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:99978200-99997200	Strong transcription	Placenta	Placenta
36	chr2:99978200-100011800	Weak transcription	Esophagus	oesophagus
37	chr2:99978400-99989600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:99978400-99989600	Weak transcription	Spleen	Spleen
39	chr2:99978600-99995600	Weak transcription	Small Intestine	intestine
40	chr2:99979200-99987400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr2:99979200-99990600	Strong transcription	Left Ventricle	heart
42	chr2:99979400-99985800	Strong transcription	HepG2	liver
43	chr2:99979400-99986000	Strong transcription	NHDF-Ad	bronchial
44	chr2:99979400-99986200	Strong transcription	K562	blood
45	chr2:99979400-99986600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr2:99979400-99987600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr2:99979400-99990600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr2:99979400-99991000	Strong transcription	Primary T cells from cord blood	blood
49	chr2:99979400-99999800	Strong transcription	Osteobl	bone
50	chr2:99979400-100001600	Strong transcription	Duodenum Mucosa	Duodenum

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