Variant report

Variant	rs183310882
Chromosome Location	chr14:79162201-79162202
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr14:79161743-79162274	SK-N-SH	brain:	n/a	chr14:79161759-79161768
2	EP300	chr14:79161477-79162479	SK-N-SH	brain:	n/a	chr14:79161759-79161769
3	EP300	chr14:79161715-79162204	SK-N-SH_RA	brain:	n/a	chr14:79161759-79161769
4	GATA3	chr14:79161668-79162251	SK-N-SH	brain:	n/a	n/a
5	GATA3	chr14:79161737-79162262	SK-N-SH	brain:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:79162188-79162238	HUVEC	blood vessel:	n/a
2	chr14:79162188-79162238	NH-A	brain:	n/a
3	chr14:79162188-79162238	GM19239	blood:	n/a
4	chr14:79162188-79162238	HNPCEpiC	eye:	n/a
5	chr14:79162188-79162238	BJ	skin:	n/a
6	chr14:79162188-79162238	GM06990	blood:	n/a
7	chr14:79162188-79162238	NT2-D1	testis:	n/a
8	chr14:79162188-79162238	HRCEpiC	kidney:	n/a
9	chr14:79162188-79162238	SK-N-SH_RA	brain:	n/a
10	chr14:79162188-79162238	AG10803	skin:	n/a
11	chr14:79162188-79162238	HRPEpiC	eye:	n/a
12	chr14:79162188-79162238	HAEpiC	amniotic membrane:	n/a
13	chr14:79162188-79162238	HCT-116	colon:	n/a
14	chr14:79162188-79162238	CMK	blood:	n/a
15	chr14:79162188-79162238	AG09319	gingival:	n/a
16	chr14:79162188-79162238	K562	blood:	n/a
17	chr14:79162188-79162238	GM12891	blood:	n/a
18	chr14:79162188-79162238	NB4	blood:	n/a
19	chr14:79162188-79162238	MCF10A-Er-Src	breast:	n/a
20	chr14:79162188-79162238	H1-hESC	embryonic stem cell:	embryo
21	chr14:79162188-79162238	AoSMC	blood vessel:	n/a
22	chr14:79162188-79162238	HL-60	blood:	n/a
23	chr14:79162188-79162238	HCM	heart:	n/a
24	chr14:79162188-79162238	HRE	kidney:	n/a
25	chr14:79162188-79162238	SK-N-MC	brain:	n/a
26	chr14:79162188-79162238	NHBE	bronchial:	n/a
27	chr14:79162188-79162238	NHDF-neo	bronchial:	n/a
28	chr14:79162188-79162238	LNCaP	prostate:	n/a
29	chr14:79162188-79162238	PrEC	prostate:	n/a
30	chr14:79162188-79162238	IMR90	lung:	fetal
31	chr14:79162188-79162238	HCPEpiC	choroid plexus:	n/a
32	chr14:79162188-79162238	AG04449	skin:	fetal
33	chr14:79162188-79162238	AG04450	lung:	fetal
34	chr14:79162188-79162238	SKMC	muscle:	n/a
35	chr14:79162188-79162238	HepG2	liver:	n/a
36	chr14:79162188-79162238	Caco-2	colon:	n/a
37	chr14:79162188-79162238	Jurkat	blood:	n/a
38	chr14:79162188-79162238	HIPEpiC	eye:	n/a
39	chr14:79162188-79162238	PFSK-1	brain:	n/a
40	chr14:79162188-79162238	PANC-1	pancreas:	n/a
41	chr14:79162188-79162238	T-47D	breast:	n/a
42	chr14:79162188-79162238	BE2_C	brain:	n/a
43	chr14:79162188-79162238	GM12878	blood:	n/a
44	chr14:79162188-79162238	HEK293	kidney:	embryo
45	chr14:79162188-79162238	ECC-1	luminal epithelium:	n/a
46	chr14:79162188-79162238	AG09309	skin:	n/a
47	chr14:79162188-79162238	RPTEC	kidney:	n/a
48	chr14:79162188-79162238	MCF-7	breast:	n/a
49	chr14:79162188-79162238	Hepatocyte	liver:	n/a
50	chr14:79162188-79162238	SK-N-SH	brain:	n/a

No data

Variant related genes	Relation type
NRXN3	TF binding region
NRXN3	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760000	chr14:78875607-79173528	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2758363	chr14:78903610-79173528	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv565236	chr14:79156377-79165596	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv565237	chr14:79157040-79165608	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	esv3530261	chr14:79159000-79165796	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv3530263	chr14:79159029-79165792	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv3530262	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv3530264	chr14:79159066-79165745	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv13449	chr14:79159520-79165627	Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
10	nsv565238	chr14:79160430-79164498	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	nsv565239	chr14:79160430-79165089	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv565240	chr14:79160430-79165596	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	nsv565241	chr14:79160430-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv565242	chr14:79160430-79166221	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	esv2421742	chr14:79160946-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv442348	chr14:79161185-79165607	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	nsv565243	chr14:79161542-79165608	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv517018	chr14:79161622-79165217	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
19	nsv565244	chr14:79161622-79165608	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
20	nsv524797	chr14:79161622-79167881	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
21	nsv514753	chr14:79161727-79165327	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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