Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:64183403-64183875	GM12878	blood:	n/a	n/a
2	ELF1	chr11:64183580-64183942	GM12878	blood:	n/a	n/a
3	POLR2A	chr11:64183528-64184016	HL-60	blood:	n/a	n/a
4	POLR2A	chr11:64183268-64184070	GM12892	blood:	n/a	n/a
5	SP1	chr11:64183471-64183873	GM12878	blood:	n/a	n/a
6	TCF12	chr11:64183411-64183914	GM12878	blood:	n/a	n/a
7	PAX5	chr11:64183198-64184055	GM12878	blood:	n/a	n/a
8	POLR2A	chr11:64183305-64183970	GM12878	blood:	n/a	n/a
9	REST	chr11:64183751-64184006	PANC-1	pancreas:	n/a	chr11:64183913-64183922 chr11:64183894-64183903
10	MAX	chr11:64183321-64183950	K562	blood:	n/a	chr11:64183795-64183805
11	POLR2A	chr11:64183608-64183835	MCF-7	breast:	n/a	n/a
12	MAX	chr11:64183509-64183907	NB4	blood:	n/a	chr11:64183795-64183805
13	EP300	chr11:64183407-64183887	GM12878	blood:	n/a	n/a
14	MAX	chr11:64183799-64183861	HepG2	liver:	n/a	n/a
15	TCF12	chr11:64183413-64183901	GM12878	blood:	n/a	n/a
16	REST	chr11:64183455-64183891	PANC-1	pancreas:	n/a	n/a
17	MYC	chr11:64183418-64183826	MCF-7	breast:	n/a	chr11:64183795-64183805
18	MAX	chr11:64183743-64183914	A549	lung:	n/a	chr11:64183795-64183805
19	TCF3	chr11:64183352-64183856	GM12878	blood:	n/a	n/a
20	POLR2A	chr11:64183434-64183907	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000231492	TF binding region

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3373822	chr11:64182426-64184924	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
2	chr11:64182400-64184000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:64182400-64184000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:64182800-64196000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:64183600-64184000	Enhancers	Gastric	stomach
6	chr11:64183600-64186000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:64183800-64186600	Weak transcription	Placenta	Placenta

Quick Search: