Variant report

Variant	rs183449515
Chromosome Location	chr17:16880037-16880038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr17:16879145-16880773	GM12878	blood:	n/a	n/a
2	POLR2A	chr17:16878230-16880821	GM12878	blood:	n/a	n/a
3	TBL1XR1	chr17:16878505-16880241	GM12878	blood:	n/a	n/a
4	STAT3	chr17:16879709-16880068	MCF10A-Er-Src	breast:	n/a	chr17:16879889-16879900
5	MTA3	chr17:16878010-16881023	GM12878	blood:	n/a	n/a
6	IKZF1	chr17:16878253-16880127	GM12878	blood:	n/a	n/a
7	MTA3	chr17:16878127-16880599	GM12878	blood:	n/a	n/a
8	NFIC	chr17:16878293-16880132	GM12878	blood:	n/a	n/a
9	POLR2A	chr17:16878342-16880680	GM18505	blood:	n/a	n/a
10	RELA	chr17:16878366-16880312	GM12878	blood:	n/a	n/a
11	STAT3	chr17:16878466-16880603	GM12878	blood:	n/a	chr17:16879276-16879288 chr17:16879889-16879900
12	BHLHE40	chr17:16878364-16880280	GM12878	blood:	n/a	n/a
13	ATF2	chr17:16879256-16880184	GM12878	blood:	n/a	n/a
14	EP300	chr17:16878390-16880675	GM12878	blood:	n/a	chr17:16879297-16879311 chr17:16879298-16879312
15	POLR2A	chr17:16878056-16880305	GM12892	blood:	n/a	n/a
16	CHD1	chr17:16878240-16880652	GM12878	blood:	n/a	n/a
17	POLR2A	chr17:16878086-16880910	GM12892	blood:	n/a	n/a
18	EP300	chr17:16878282-16880413	GM12878	blood:	n/a	chr17:16879297-16879311 chr17:16879298-16879312
19	POLR2A	chr17:16878062-16880885	GM12878	blood:	n/a	n/a
20	POLR2A	chr17:16877924-16880892	GM12892	blood:	n/a	n/a
21	NFIC	chr17:16878245-16880801	GM12878	blood:	n/a	n/a
22	EBF1	chr17:16878282-16880926	GM12878	blood:	n/a	chr17:16879702-16879713
23	POLR2A	chr17:16878617-16880545	GM12878	blood:	n/a	n/a
24	PML	chr17:16878377-16880180	GM12878	blood:	n/a	n/a
25	POLR2A	chr17:16878302-16880573	GM12891	blood:	n/a	n/a
26	NFATC1	chr17:16878490-16880091	GM12878	blood:	n/a	n/a
27	TBP	chr17:16878380-16880770	GM12878	blood:	n/a	n/a
28	MEF2A	chr17:16878288-16880050	GM12878	blood:	n/a	chr17:16878837-16878851
29	ATF2	chr17:16878298-16880053	GM12878	blood:	n/a	n/a
30	RCOR1	chr17:16878383-16880321	GM12878	blood:	n/a	n/a
31	JUND	chr17:16879659-16880153	GM12878	blood:	n/a	n/a
32	CEBPB	chr17:16878432-16880095	GM12878	blood:	n/a	n/a
33	MXI1	chr17:16878465-16880743	GM12878	blood:	n/a	n/a
34	FOXM1	chr17:16878248-16880298	GM12878	blood:	n/a	n/a
35	STAT5A	chr17:16877948-16880337	GM12878	blood:	n/a	chr17:16879276-16879288 chr17:16878439-16878451

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:16864871..16867780-chr17:16878608..16880115,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNFRSF13B-1	chr17:16879313-16880944	ENSG00000230709

Variant related genes	Relation type
TNFRSF13B	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058448	chr17:16389870-16926287	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1058863	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv543227	chr17:16812121-16943780	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv2761948	chr17:16868561-16920568	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv543230	chr17:16878578-16892465	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16867400-16883800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:16873000-16880800	Enhancers	Fetal Thymus	thymus
3	chr17:16875200-16885800	Enhancers	Primary B cells from cord blood	blood
4	chr17:16875800-16887200	Enhancers	Primary B cells from peripheral blood	blood
5	chr17:16878000-16882800	Flanking Active TSS	GM12878-XiMat	blood
6	chr17:16878400-16880600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr17:16878400-16883600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:16878600-16880200	Enhancers	Thymus	Thymus
9	chr17:16878600-16881600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr17:16878800-16884200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr17:16879600-16880200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:16879600-16880200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr17:16879600-16880200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:16879600-16880400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:16879600-16880400	Bivalent Enhancer	HUVEC	blood vessel
16	chr17:16879600-16880800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:16879600-16880800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:16879800-16881400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr17:16880000-16880400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:16880000-16880800	Flanking Active TSS	Dnd41	blood

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