Variant report

Variant	rs183450417
Chromosome Location	chr11:121453232-121453233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv527072	chr11:121448090-121486552	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34768	chr11:121452651-121534938	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121407200-121459000	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:121416600-121471800	Strong transcription	Primary T cells from cord blood	blood
3	chr11:121425000-121456800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:121431000-121466400	Weak transcription	Ovary	ovary
5	chr11:121435200-121464800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:121437800-121453600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:121438400-121453600	Weak transcription	Colonic Mucosa	Colon
8	chr11:121440600-121485000	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:121442200-121456800	Weak transcription	Esophagus	oesophagus
10	chr11:121443000-121455000	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr11:121443400-121464600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:121443800-121456800	Weak transcription	Lung	lung
13	chr11:121443800-121458600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:121443800-121461600	Weak transcription	Pancreas	Pancrea
15	chr11:121445000-121454600	Strong transcription	Fetal Intestine Large	intestine
16	chr11:121448200-121453600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:121448200-121453600	Weak transcription	Spleen	Spleen
18	chr11:121448400-121461200	Weak transcription	Gastric	stomach
19	chr11:121448800-121495600	Weak transcription	Stomach Mucosa	stomach
20	chr11:121449600-121457200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr11:121449800-121465800	Weak transcription	Adipose Nuclei	Adipose
22	chr11:121450000-121460200	Weak transcription	Brain Germinal Matrix	brain
23	chr11:121450200-121453600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:121450200-121453800	Weak transcription	Aorta	Aorta
25	chr11:121450200-121453800	Weak transcription	HMEC	breast
26	chr11:121450200-121455200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:121450200-121456400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:121450200-121458600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:121450200-121460800	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:121450200-121461600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:121450200-121461800	Weak transcription	Fetal Brain Male	brain
32	chr11:121450600-121460600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:121451000-121453600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:121451000-121453600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:121451000-121457800	Weak transcription	Fetal Lung	lung
36	chr11:121451000-121462600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr11:121451200-121453400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:121451200-121454200	Enhancers	Primary hematopoietic stem cells	blood
39	chr11:121451200-121455600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr11:121451200-121456800	Weak transcription	Fetal Brain Female	brain
41	chr11:121451200-121461600	Weak transcription	Fetal Kidney	kidney
42	chr11:121451200-121464000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:121451200-121488200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:121451400-121453600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:121451400-121459000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:121451400-121469600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr11:121451400-121470000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr11:121451600-121453800	Enhancers	Brain Substantia Nigra	brain
49	chr11:121451600-121453800	Genic enhancers	GM12878-XiMat	blood
50	chr11:121451600-121454200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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