Variant report

Variant	rs183457454
Chromosome Location	chr19:51401517-51401518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr19:51401387-51401610	K562	blood:	n/a	n/a
2	RCOR1	chr19:51401337-51401670	K562	blood:	n/a	n/a
3	WRNIP1	chr19:51399791-51401549	GM12878	blood:	n/a	n/a
4	RCOR1	chr19:51399819-51401581	GM12878	blood:	n/a	n/a
5	ZNF143	chr19:51399808-51401617	GM12878	blood:	n/a	chr19:51400722-51400740

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51305899..51307746-chr19:51399929..51401731,2	K562	blood:
2	chr19:51391887..51394090-chr19:51400649..51402810,2	MCF-7	breast:
3	chr19:51398902..51402347-chr19:51410482..51413710,3	K562	blood:
4	chr19:51398615..51401717-chr19:51409067..51411982,3	K562	blood:
5	chr19:51306246..51308382-chr19:51400037..51401731,2	K562	blood:
6	chr19:51297092..51299196-chr19:51400128..51402648,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
KLKP1	TF binding region
ENSG00000197588	Chromatin interaction
ENSG00000167747	Chromatin interaction
ENSG00000167749	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060760	chr19:50883425-51463712	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv1058177	chr19:50984774-51463712	Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv511623	chr19:51400775-51408842	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
4	esv1010378	chr19:51401144-51403251	Enhancers Weak transcription	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51399800-51401600	Enhancers	HMEC	breast
2	chr19:51399800-51403000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr19:51400600-51402800	Weak transcription	K562	blood
4	chr19:51401000-51401600	Enhancers	GM12878-XiMat	blood
5	chr19:51401400-51402600	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links