Variant report

Variant	rs183469198
Chromosome Location	chr19:39298551-39298552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:13)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:13 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR3C1	chr19:39298358-39298697	A549	lung:	n/a	n/a
2	NR3C1	chr19:39298290-39298697	A549	lung:	n/a	n/a
3	NR3C1	chr19:39298414-39298663	A549	lung:	n/a	n/a
4	MAX	chr19:39298362-39298599	K562	blood:	n/a	n/a
5	NR3C1	chr19:39298214-39298728	A549	lung:	n/a	n/a
6	FOXA2	chr19:39298227-39298738	A549	lung:	n/a	n/a
7	TAL1	chr19:39298467-39298621	K562	blood:	n/a	n/a
8	GATA2	chr19:39298286-39298625	K562	blood:	n/a	n/a
9	NR2F2	chr19:39298270-39298820	K562	blood:	n/a	n/a
10	USF1	chr19:39298325-39298705	A549	lung:	n/a	n/a
11	NR3C1	chr19:39298214-39298705	A549	lung:	n/a	n/a
12	NR2F2	chr19:39298342-39298778	K562	blood:	n/a	n/a
13	FOXA2	chr19:39298236-39298782	A549	lung:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39295644..39297355-chr19:39298122..39300967,2	MCF-7	breast:

No data

Variant related genes	Relation type
LGALS4	TF binding region
ENSG00000171747	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1061904	chr19:39249692-39302843	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
4	nsv911670	chr19:39250308-39322087	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv911671	chr19:39252238-39306425	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
6	nsv911672	chr19:39252238-39318006	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1058132	chr19:39279522-39302843	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv9722	chr19:39298073-39307573	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39283200-39305600	Weak transcription	Brain Angular Gyrus	brain
2	chr19:39283200-39305600	Weak transcription	Brain Substantia Nigra	brain
3	chr19:39283600-39305600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr19:39283600-39305800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr19:39283600-39305800	Weak transcription	Brain Hippocampus Middle	brain
6	chr19:39283600-39305800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr19:39283800-39306000	Weak transcription	Primary B cells from cord blood	blood
8	chr19:39284000-39305600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr19:39284000-39318200	Weak transcription	Fetal Kidney	kidney
10	chr19:39284200-39305800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr19:39285200-39309400	Weak transcription	Fetal Heart	heart
12	chr19:39290200-39305800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:39290800-39310600	Weak transcription	HMEC	breast
14	chr19:39291200-39307400	Weak transcription	Fetal Lung	lung
15	chr19:39291400-39305600	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr19:39292000-39305800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr19:39292400-39300400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr19:39292600-39301800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr19:39292600-39303800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr19:39292600-39305800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr19:39292800-39303800	Weak transcription	Fetal Muscle Leg	muscle
22	chr19:39292800-39305800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:39292800-39306000	Weak transcription	Brain Anterior Caudate	brain
24	chr19:39293000-39305200	Weak transcription	Primary T cells from cord blood	blood
25	chr19:39294400-39299400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr19:39294400-39301800	Weak transcription	Small Intestine	intestine
27	chr19:39294600-39309800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:39294800-39299400	Weak transcription	Gastric	stomach
29	chr19:39294800-39302600	Weak transcription	Liver	Liver
30	chr19:39294800-39309800	Weak transcription	Psoas Muscle	Psoas
31	chr19:39295000-39300400	Weak transcription	Pancreas	Pancrea
32	chr19:39295000-39303000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr19:39295000-39303000	Weak transcription	Placenta	Placenta
34	chr19:39295000-39305600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr19:39295000-39305800	Weak transcription	Adipose Nuclei	Adipose
36	chr19:39295200-39302800	Weak transcription	Fetal Stomach	stomach
37	chr19:39296000-39300400	Genic enhancers	Fetal Intestine Small	intestine
38	chr19:39296000-39305800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr19:39296200-39305000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr19:39296200-39307000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr19:39296200-39318200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr19:39296400-39298800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr19:39296400-39299000	Weak transcription	Lung	lung
44	chr19:39296400-39299200	Weak transcription	Spleen	Spleen
45	chr19:39296400-39299400	Weak transcription	Colonic Mucosa	Colon
46	chr19:39296400-39301000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr19:39296400-39304200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr19:39296400-39305600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr19:39296400-39305600	Weak transcription	Ovary	ovary
50	chr19:39296400-39305600	Weak transcription	Monocytes-CD14+_RO01746	blood

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