Variant report

Variant	rs183487827
Chromosome Location	chr11:59521712-59521713
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr11:59521468-59521805	Hela-S3	cervix:	n/a	n/a
2	NR2F2	chr11:59521534-59521942	MCF-7	breast:	n/a	n/a
3	UBTF	chr11:59521459-59524064	K562	blood:	n/a	n/a
4	TCF12	chr11:59521507-59521762	H1-hESC	embryonic stem cell:	n/a	n/a
5	ZNF143	chr11:59521414-59521869	GM12878	blood:	n/a	n/a
6	RAD21	chr11:59521310-59522012	HCT-116	colon:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
7	JUND	chr11:59521486-59521793	H1-hESC	embryonic stem cell:	n/a	n/a
8	E2F6	chr11:59521513-59523560	K562	blood:	n/a	chr11:59522829-59522839 chr11:59523236-59523248 chr11:59522826-59522835 chr11:59521608-59521617 chr11:59522828-59522838 chr11:59521715-59521725 chr11:59523060-59523070
9	MAX	chr11:59521399-59523549	ECC-1	luminal epithelium:	n/a	n/a
10	FOXP2	chr11:59521447-59521756	SK-N-MC	brain:	n/a	n/a
11	MAX	chr11:59521372-59523745	HepG2	liver:	n/a	n/a
12	TCF7L2	chr11:59521567-59522042	PANC-1	pancreas:	n/a	n/a
13	MAZ	chr11:59521350-59521923	IMR90	lung:	n/a	n/a
14	ELK1	chr11:59521515-59521769	Hela-S3	cervix:	n/a	n/a
15	CTCF	chr11:59521429-59521790	K562	blood:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
16	CTCF	chr11:59521409-59521863	HCT-116	colon:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
17	RAD21	chr11:59521247-59523103	SK-N-SH	brain:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
18	CTCF	chr11:59521458-59521775	Lung_OC	lung:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
19	CTCF	chr11:59521476-59521736	LNCaP	prostate:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
20	CTCF	chr11:59521411-59521833	HepG2	liver:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
21	YY1	chr11:59521495-59521793	SK-N-SH_RA	brain:	n/a	n/a
22	MYC	chr11:59521554-59521749	MCF-7	breast:	n/a	n/a
23	RAD21	chr11:59521412-59521815	HepG2	liver:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
24	SMC3	chr11:59521409-59522060	Hela-S3	cervix:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
25	WRNIP1	chr11:59521480-59521758	GM12878	blood:	n/a	n/a
26	RAD21	chr11:59521353-59522092	MCF-7	breast:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
27	POLR2A	chr11:59521558-59521761	H1-hESC	embryonic stem cell:	n/a	n/a
28	RAD21	chr11:59521413-59521776	GM12878	blood:	n/a	chr11:59521600-59521619 chr11:59521605-59521615 chr11:59521603-59521616
29	CTCF	chr11:59521455-59521736	SK-N-SH_RA	brain:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
30	FOSL2	chr11:59521420-59521795	HepG2	liver:	n/a	n/a
31	SIN3AK20	chr11:59521442-59521937	PANC-1	pancreas:	n/a	n/a
32	CTCF	chr11:59521463-59521764	ECC-1	luminal epithelium:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
33	CTCF	chr11:59520889-59523923	SK-N-SH	brain:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
34	USF1	chr11:59521437-59521895	A549	lung:	n/a	n/a
35	CTCF	chr11:59521429-59521719	A549	lung:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
36	ZNF384	chr11:59521506-59521826	K562	blood:	n/a	n/a
37	UBTF	chr11:59521560-59521771	K562	blood:	n/a	n/a
38	ZEB1	chr11:59521394-59523791	HepG2	liver:	n/a	n/a
39	POLR2A	chr11:59521521-59524625	HUVEC	blood vessel:	n/a	n/a
40	KAP1	chr11:59521408-59522767	HEK293	kidney:	n/a	n/a
41	ZC3H11A	chr11:59521455-59521760	K562	blood:	n/a	n/a
42	SP1	chr11:59521444-59521763	GM12878	blood:	n/a	chr11:59521549-59521563
43	PAX5	chr11:59521495-59521742	GM12878	blood:	n/a	n/a
44	CTCF	chr11:59521252-59522075	HCT-116	colon:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615
45	CBX3	chr11:59521296-59522730	K562	blood:	n/a	n/a
46	ZBTB7A	chr11:59521567-59521780	HepG2	liver:	n/a	chr11:59521607-59521616
47	RCOR1	chr11:59521553-59521835	GM12878	blood:	n/a	n/a
48	CEBPB	chr11:59521431-59521818	Hela-S3	cervix:	n/a	n/a
49	SMC3	chr11:59521438-59521982	K562	blood:	n/a	chr11:59521601-59521615 chr11:59521601-59521609 chr11:59521622-59521630 chr11:59521605-59521615
50	CTCF	chr11:59521490-59521754	MCF-7	breast:	n/a	chr11:59521599-59521617 chr11:59521601-59521622 chr11:59521604-59521614 chr11:59521602-59521615 chr11:59521602-59521611 chr11:59521600-59521616 chr11:59521602-59521615

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:59521665-59521715	GM12891	blood:	n/a
2	chr11:59521665-59521715	PANC-1	pancreas:	n/a
3	chr11:59521665-59521715	NT2-D1	testis:	n/a
4	chr11:59521665-59521715	HAEpiC	amniotic membrane:	n/a
5	chr11:59521665-59521715	HPAEpiC	pulmonary alveolar:	n/a
6	chr11:59521665-59521715	MCF10A-Er-Src	breast:	n/a
7	chr11:59521665-59521715	GM06990	blood:	n/a
8	chr11:59521665-59521715	PFSK-1	brain:	n/a
9	chr11:59521665-59521715	GM12892	blood:	n/a
10	chr11:59521665-59521715	HRPEpiC	eye:	n/a
11	chr11:59521665-59521715	RPTEC	kidney:	n/a
12	chr11:59521665-59521715	HEEpiC	esophagus:	n/a
13	chr11:59521665-59521715	SAEC	small airway:	n/a
14	chr11:59521665-59521715	AoSMC	blood vessel:	n/a
15	chr11:59521665-59521715	T-47D	breast:	n/a
16	chr11:59521665-59521715	BJ	skin:	n/a
17	chr11:59521665-59521715	NB4	blood:	n/a
18	chr11:59521665-59521715	SK-N-SH	brain:	n/a
19	chr11:59521665-59521715	HCM	heart:	n/a
20	chr11:59521665-59521715	HRCEpiC	kidney:	n/a
21	chr11:59521665-59521715	SKMC	muscle:	n/a
22	chr11:59521665-59521715	HRE	kidney:	n/a
23	chr11:59521665-59521715	ECC-1	luminal epithelium:	n/a
24	chr11:59521665-59521715	ovcar-3	ovarian:	n/a
25	chr11:59521665-59521715	AG04449	skin:	fetal
26	chr11:59521665-59521715	LNCaP	prostate:	n/a
27	chr11:59521665-59521715	BE2_C	brain:	n/a
28	chr11:59521665-59521715	HCPEpiC	choroid plexus:	n/a
29	chr11:59521665-59521715	U87	brain:	n/a
30	chr11:59521665-59521715	Hepatocyte	liver:	n/a
31	chr11:59521665-59521715	HIPEpiC	eye:	n/a
32	chr11:59521665-59521715	K562	blood:	n/a
33	chr11:59521665-59521715	SK-N-MC	brain:	n/a
34	chr11:59521665-59521715	HL-60	blood:	n/a
35	chr11:59521665-59521715	NH-A	brain:	n/a
36	chr11:59521665-59521715	GM12878	blood:	n/a
37	chr11:59521665-59521715	NHBE	bronchial:	n/a
38	chr11:59521665-59521715	Caco-2	colon:	n/a
39	chr11:59521665-59521715	HCF	heart:	n/a
40	chr11:59521665-59521715	ProgFib	skin:	n/a
41	chr11:59521665-59521715	GM19239	blood:	n/a
42	chr11:59521665-59521715	AG10803	skin:	n/a
43	chr11:59521665-59521715	HEK293	kidney:	embryo
44	chr11:59521665-59521715	HUVEC	blood vessel:	n/a
45	chr11:59521665-59521715	HepG2	liver:	n/a
46	chr11:59521665-59521715	AG09319	gingival:	n/a
47	chr11:59521665-59521715	H1-hESC	embryonic stem cell:	embryo
48	chr11:59521665-59521715	A549	lung:	n/a
49	chr11:59521665-59521715	HMEC	breast:	n/a
50	chr11:59521665-59521715	HNPCEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:59521037..59522134-chr11:59569735..59571070,7	MCF-7	breast:
2	chr11:59521192..59521888-chr11:59568592..59569530,2	MCF-7	breast:
3	chr11:59521347..59522076-chr11:59577896..59578446,2	MCF-7	breast:
4	chr11:59521183..59522129-chr11:59897665..59898553,3	K562	blood:
5	chr11:59520214..59524923-chr11:59576549..59579669,4	MCF-7	breast:
6	chr11:59521605..59525070-chr11:59543036..59549785,6	MCF-7	breast:
7	chr11:59521189..59522029-chr11:59569757..59570741,3	K562	blood:
8	chr11:59480505..59482058-chr11:59521372..59523220,2	MCF-7	breast:
9	chr11:59381725..59384642-chr11:59521273..59522941,2	K562	blood:
10	chr11:59520634..59522259-chr11:59568757..59570737,15	MCF-7	breast:
11	chr1:114300956..114303148-chr11:59521456..59522999,2	MCF-7	breast:
12	chr11:59520935..59525781-chr11:59552803..59557885,8	MCF-7	breast:
13	chr11:59479954..59482315-chr11:59521677..59523287,2	K562	blood:
14	chr11:59519722..59526041-chr11:59575307..59578961,7	MCF-7	breast:
15	chr11:59520651..59522378-chr11:59577196..59579780,2	K562	blood:
16	chr11:59521565..59522093-chr11:59577744..59578503,3	K562	blood:

Variant related genes	Relation type
STX3	TF binding region
STX3	CpG island
ENSG00000110048	Chromatin interaction
ENSG00000166900	Chromatin interaction
ENSG00000255139	Chromatin interaction
ENSG00000116793	Chromatin interaction
ENSG00000166902	Chromatin interaction
ENSG00000172289	Chromatin interaction
ENSG00000234964	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752406	chr11:59490424-59529524	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	n/a
2	esv2755215	chr11:59515524-59529524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	n/a
3	nsv1046086	chr11:59520424-59561455	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59521200-59522000	Active TSS	Rectal Smooth Muscle	rectum
2	chr11:59521200-59523600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:59521400-59521800	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr11:59521400-59521800	Active TSS	Primary T helper cells PMA-I stimulated	--
5	chr11:59521400-59521800	Active TSS	Fetal Brain Female	brain
6	chr11:59521400-59521800	Active TSS	Hela-S3	cervix
7	chr11:59521400-59522000	Active TSS	Primary T cells from cord blood	blood
8	chr11:59521400-59522000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:59521400-59522400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:59521400-59522400	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr11:59521400-59523400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:59521400-59523400	Active TSS	Brain Angular Gyrus	brain
13	chr11:59521400-59523600	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr11:59521400-59523800	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr11:59521400-59524000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr11:59521400-59524000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:59521400-59524000	Active TSS	Fetal Intestine Large	intestine
18	chr11:59521400-59524200	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr11:59521400-59524400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:59521400-59524400	Active TSS	HSMMtube	muscle
21	chr11:59521400-59524600	Active TSS	Fetal Intestine Small	intestine
22	chr11:59521600-59521800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:59521600-59521800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:59521600-59521800	Active TSS	Primary B cells from peripheral blood	blood
25	chr11:59521600-59521800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr11:59521600-59521800	Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr11:59521600-59521800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:59521600-59521800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr11:59521600-59521800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr11:59521600-59521800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:59521600-59521800	Active TSS	Muscle Satellite Cultured Cells	--
32	chr11:59521600-59521800	Active TSS	Adipose Nuclei	Adipose
33	chr11:59521600-59521800	Active TSS	Liver	Liver
34	chr11:59521600-59521800	Active TSS	Fetal Kidney	kidney
35	chr11:59521600-59521800	Active TSS	Fetal Lung	lung
36	chr11:59521600-59521800	Flanking Active TSS	Fetal Thymus	thymus
37	chr11:59521600-59521800	Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr11:59521600-59521800	Active TSS	HepG2	liver
39	chr11:59521600-59521800	Active TSS	HMEC	breast
40	chr11:59521600-59521800	Active TSS	K562	blood
41	chr11:59521600-59521800	Active TSS	Osteobl	bone
42	chr11:59521600-59522000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:59521600-59522000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr11:59521600-59522000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:59521600-59522000	Active TSS	Duodenum Mucosa	Duodenum
46	chr11:59521600-59522000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr11:59521600-59522000	Active TSS	Placenta	Placenta
48	chr11:59521600-59522000	Bivalent/Poised TSS	Fetal Stomach	stomach
49	chr11:59521600-59522000	Active TSS	NH-A	brain
50	chr11:59521600-59522000	Flanking Active TSS	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links