Variant report

Variant	rs183514898
Chromosome Location	chr6:53699061-53699062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1021506	chr6:53600338-53770482	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53680400-53721600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:53684000-53710200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:53687600-53702000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:53689400-53699400	Enhancers	Fetal Intestine Large	intestine
5	chr6:53692600-53702600	Weak transcription	Aorta	Aorta
6	chr6:53693400-53700800	Weak transcription	Pancreas	Pancrea
7	chr6:53693400-53701400	Weak transcription	HSMM	muscle
8	chr6:53693400-53720000	Weak transcription	Left Ventricle	heart
9	chr6:53694000-53708400	Weak transcription	Fetal Thymus	thymus
10	chr6:53695000-53702600	Weak transcription	Gastric	stomach
11	chr6:53695000-53705600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:53695000-53710000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:53695000-53719800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:53695000-53743200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:53695600-53700800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr6:53696000-53701400	Enhancers	Brain Hippocampus Middle	brain
17	chr6:53696200-53702600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:53696400-53708400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:53696600-53702600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:53696800-53699400	Enhancers	NHEK	skin
21	chr6:53696800-53699800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:53697000-53700200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:53697200-53699400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:53697200-53699400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:53697200-53718600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:53697800-53699200	Enhancers	Brain Germinal Matrix	brain
27	chr6:53697800-53699600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:53698000-53699400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:53698000-53700800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr6:53698000-53702200	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:53698000-53702600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:53698000-53715600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:53698200-53699200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr6:53698200-53702200	Weak transcription	Thymus	Thymus
35	chr6:53698200-53702600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:53698200-53702800	Weak transcription	HSMMtube	muscle
37	chr6:53698200-53702800	Weak transcription	HUVEC	blood vessel
38	chr6:53698400-53699200	Enhancers	Brain Substantia Nigra	brain
39	chr6:53698400-53702600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:53698600-53699200	Enhancers	Brain Angular Gyrus	brain
41	chr6:53698600-53699200	Enhancers	Small Intestine	intestine
42	chr6:53698600-53702600	Weak transcription	HMEC	breast
43	chr6:53698800-53699200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:53698800-53699200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:53698800-53699200	Weak transcription	Brain Anterior Caudate	brain
46	chr6:53698800-53699200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:53698800-53699200	Enhancers	NH-A	brain
48	chr6:53698800-53699400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr6:53698800-53699400	Enhancers	Fetal Heart	heart
50	chr6:53698800-53700000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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