The 2.0 version of rSNPBase

Variant report

Variant rs183611965
Chromosome Location chr13:49039656-49039657
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:49017400-49062200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr13:49018000-49062400 Weak transcription Fetal Brain Male brain
3 chr13:49020800-49062000 Weak transcription Fetal Kidney kidney
4 chr13:49021200-49058600 Weak transcription Hela-S3 cervix
5 chr13:49023800-49061000 Weak transcription Small Intestine intestine
6 chr13:49023800-49073800 Weak transcription NH-A brain
7 chr13:49024000-49059000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr13:49025600-49041200 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr13:49025600-49056800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
10 chr13:49025600-49066200 Weak transcription Psoas Muscle Psoas
11 chr13:49027000-49039800 Strong transcription Monocytes-CD14+_RO01746 blood
12 chr13:49027200-49039800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr13:49027400-49039800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr13:49027600-49039800 Strong transcription Skeletal Muscle Female skeletal muscle
15 chr13:49027600-49049200 Weak transcription A549 lung
16 chr13:49027800-49043000 Weak transcription HUES6 Cell Line embryonic stem cell
17 chr13:49028000-49071000 Weak transcription HUES48 Cell Line embryonic stem cell
18 chr13:49028600-49039800 Strong transcription Primary hematopoietic stem cells short term culture blood
19 chr13:49029000-49046000 Weak transcription HSMMtube muscle
20 chr13:49029200-49062000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr13:49029400-49052400 Weak transcription K562 blood
22 chr13:49030600-49070600 Weak transcription H1 Cell Line embryonic stem cell
23 chr13:49031600-49049600 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr13:49031600-49055800 Weak transcription Brain Inferior Temporal Lobe brain
25 chr13:49031600-49066200 Weak transcription Rectal Smooth Muscle rectum
26 chr13:49031800-49041200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr13:49031800-49045800 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr13:49031800-49052000 Weak transcription HepG2 liver
29 chr13:49031800-49052600 Weak transcription Placenta Placenta
30 chr13:49031800-49059200 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr13:49031800-49060200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
32 chr13:49031800-49060600 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr13:49031800-49065400 Weak transcription Brain Substantia Nigra brain
34 chr13:49032000-49050800 Weak transcription Brain Hippocampus Middle brain
35 chr13:49032000-49065600 Weak transcription Brain Anterior Caudate brain
36 chr13:49032000-49066200 Weak transcription Colonic Mucosa Colon
37 chr13:49032200-49053400 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr13:49032200-49054000 Weak transcription Aorta Aorta
39 chr13:49032200-49056000 Weak transcription Brain Germinal Matrix brain
40 chr13:49032400-49040600 Weak transcription Fetal Brain Female brain
41 chr13:49032400-49049000 Weak transcription Lung lung
42 chr13:49032400-49052600 Weak transcription NHLF lung
43 chr13:49032400-49053000 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr13:49032400-49062600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
45 chr13:49032400-49066200 Weak transcription Spleen Spleen
46 chr13:49032400-49066600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr13:49032400-49066600 Weak transcription Ovary ovary
48 chr13:49032400-49067400 Weak transcription Pancreas Pancrea
49 chr13:49032400-49067600 Weak transcription Gastric stomach
50 chr13:49032600-49040800 Weak transcription Primary T helper 17 cells PMA-I stimulated --

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Last update: Aug 31, 2015