Variant report

Variant	rs183630084
Chromosome Location	chr4:106393656-106393657
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:106393178..106395974-chr4:106403458..106406397,4	K562	blood:
2	chr4:106066483..106069673-chr4:106390838..106393733,3	K562	blood:
3	chr4:106066586..106070319-chr4:106392729..106397085,7	MCF-7	breast:
4	chr4:105817842..105820618-chr4:106392954..106394791,2	MCF-7	breast:
5	chr4:105848795..105851289-chr4:106392054..106394222,2	MCF-7	breast:
6	chr4:106066539..106069010-chr4:106392150..106395317,5	MCF-7	breast:
7	chr4:106393199..106396342-chr4:106628328..106631625,4	K562	blood:
8	chr4:106373864..106376614-chr4:106391989..106394662,2	MCF-7	breast:
9	chr4:106046108..106050165-chr4:106391446..106394724,4	MCF-7	breast:
10	chr4:106064984..106068563-chr4:106391196..106395238,6	K562	blood:
11	chr4:106368037..106370559-chr4:106393297..106395424,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction
ENSG00000168769	Chromatin interaction
ENSG00000138777	Chromatin interaction
ENSG00000249264	Chromatin interaction
ENSG00000138780	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3421073	chr4:106393528-106396476	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106377000-106394000	Weak transcription	Gastric	stomach
2	chr4:106381200-106394000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:106385000-106394000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:106386400-106394200	Weak transcription	Spleen	Spleen
5	chr4:106388400-106394000	Weak transcription	Lung	lung
6	chr4:106388600-106394000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:106392200-106394200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr4:106392200-106394600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:106392400-106394000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:106392400-106394000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:106392400-106394000	Flanking Active TSS	NHEK	skin
12	chr4:106392600-106393800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:106392600-106393800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr4:106392600-106393800	Flanking Active TSS	HepG2	liver
15	chr4:106392600-106394000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:106392600-106394000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:106392600-106394000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr4:106392600-106394000	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr4:106392600-106394000	Flanking Active TSS	Rectal Smooth Muscle	rectum
20	chr4:106392600-106394000	Flanking Active TSS	NHDF-Ad	bronchial
21	chr4:106392600-106394200	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr4:106392600-106394200	Flanking Active TSS	HUVEC	blood vessel
23	chr4:106392600-106394400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:106392600-106394400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr4:106392600-106394400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr4:106392600-106394400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:106392600-106394400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:106392600-106394400	Flanking Active TSS	Liver	Liver
29	chr4:106392600-106394400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr4:106392600-106394400	Flanking Active TSS	NHLF	lung
31	chr4:106392600-106394600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:106392600-106394600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr4:106392800-106393800	Flanking Active TSS	Fetal Intestine Small	intestine
34	chr4:106392800-106393800	Enhancers	Fetal Thymus	thymus
35	chr4:106392800-106393800	Flanking Active TSS	HSMM	muscle
36	chr4:106392800-106394000	Enhancers	Primary B cells from peripheral blood	blood
37	chr4:106392800-106394000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr4:106392800-106394000	Flanking Active TSS	Hela-S3	cervix
39	chr4:106392800-106394000	Flanking Active TSS	NH-A	brain
40	chr4:106392800-106394200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr4:106392800-106394200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr4:106392800-106395600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr4:106393000-106393800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:106393000-106393800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr4:106393000-106393800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
46	chr4:106393000-106393800	Enhancers	Thymus	Thymus
47	chr4:106393000-106394000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr4:106393000-106394000	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr4:106393000-106394000	Flanking Active TSS	Brain Angular Gyrus	brain
50	chr4:106393000-106394000	Flanking Active TSS	Fetal Heart	heart

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