Variant report

Variant	rs183679069
Chromosome Location	chr11:17478610-17478611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:17478295..17480154-chr11:17482165..17484728,2	K562	blood:
2	chr11:17476190..17478862-chr11:17505917..17508222,2	K562	blood:
3	chr11:17474460..17476644-chr11:17478483..17480619,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897019	chr11:17475443-17499547	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv897020	chr11:17476516-17491386	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv897021	chr11:17478157-17491386	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv897022	chr11:17478157-17496516	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17461200-17497400	Weak transcription	Gastric	stomach
2	chr11:17465800-17481600	Weak transcription	Fetal Brain Female	brain
3	chr11:17465800-17496400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:17470200-17482000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:17472400-17489600	Weak transcription	Brain Substantia Nigra	brain
6	chr11:17473800-17478800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:17474000-17482200	Weak transcription	Brain Angular Gyrus	brain
8	chr11:17474000-17485000	Weak transcription	Lung	lung
9	chr11:17474400-17479000	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:17474400-17481800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:17474600-17481800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:17474800-17481800	Weak transcription	Brain Anterior Caudate	brain
13	chr11:17474800-17481800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:17476200-17479000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:17476400-17480600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:17478400-17480400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:17478600-17479200	Bivalent Enhancer	Adipose Nuclei	Adipose
18	chr11:17478600-17479800	Enhancers	Fetal Brain Male	brain
19	chr11:17478600-17480000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr11:17478600-17480000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links