Variant report

Variant	rs183687456
Chromosome Location	chr11:85688384-85688385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:85686956-85689394	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85687169..85689223-chr11:85690219..85693440,3	K562	blood:
2	chr11:85685544..85689773-chr11:85693823..85697719,5	K562	blood:

Variant related genes	Relation type
PICALM	TF binding region
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv468769	chr11:85683554-85757589	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv555641	chr11:85683554-85757589	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv898054	chr11:85683554-85772636	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv469975	chr11:85688209-85729372	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv468770	chr11:85688209-85751883	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv555642	chr11:85688209-85751883	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv468771	chr11:85688209-85757589	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv468773	chr11:85688209-85757589	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv555643	chr11:85688209-85757589	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv468774	chr11:85688209-85775059	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv555644	chr11:85688209-85775059	Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
2	chr11:85663400-85692000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:85663800-85740200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:85664400-85693600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:85664400-85699800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:85664400-85726800	Strong transcription	Liver	Liver
7	chr11:85664400-85729000	Strong transcription	Placenta	Placenta
8	chr11:85664600-85693200	Strong transcription	Fetal Thymus	thymus
9	chr11:85664600-85730800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:85664800-85689400	Strong transcription	Primary B cells from cord blood	blood
11	chr11:85664800-85733000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:85665200-85742600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr11:85665200-85743000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:85665400-85699800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr11:85665800-85699600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr11:85665800-85701200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:85665800-85711400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:85666000-85735800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr11:85666400-85693600	Strong transcription	Primary hematopoietic stem cells	blood
20	chr11:85667800-85701800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:85667800-85712000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:85668000-85691400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr11:85670000-85715800	Weak transcription	Colonic Mucosa	Colon
24	chr11:85671800-85710600	Weak transcription	Psoas Muscle	Psoas
25	chr11:85673200-85702800	Weak transcription	Small Intestine	intestine
26	chr11:85674000-85695200	Strong transcription	HSMM	muscle
27	chr11:85674000-85708600	Strong transcription	K562	blood
28	chr11:85674200-85715400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:85675000-85693200	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr11:85675000-85742600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr11:85675200-85700000	Strong transcription	GM12878-XiMat	blood
32	chr11:85675400-85693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:85675600-85693000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:85677800-85709600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:85678000-85690200	Weak transcription	Pancreas	Pancrea
36	chr11:85679400-85688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr11:85679800-85697000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr11:85680000-85693600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:85680600-85731600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:85680800-85708400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:85680800-85714400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:85680800-85725600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:85681000-85693400	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:85681000-85694600	Strong transcription	NHDF-Ad	bronchial
45	chr11:85681000-85701800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr11:85681000-85725800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:85681000-85729400	Strong transcription	NH-A	brain
48	chr11:85681200-85693000	Strong transcription	Left Ventricle	heart
49	chr11:85681200-85693200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr11:85681200-85696200	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links