Variant report

Variant	rs183688314
Chromosome Location	chr9:136608519-136608520
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:136607872-136608819	SK-N-SH	brain:	n/a	chr9:136608166-136608179
2	CTCF	chr9:136607975-136608588	HepG2	liver:	n/a	chr9:136608256-136608265
3	CTCF	chr9:136608001-136608653	MCF-7	breast:	n/a	chr9:136608256-136608265
4	SMC3	chr9:136607499-136608644	SK-N-SH	brain:	n/a	chr9:136608259-136608266
5	RAD21	chr9:136607970-136608557	HepG2	liver:	n/a	chr9:136608166-136608179
6	CTCF	chr9:136607882-136608591	K562	blood:	n/a	chr9:136608256-136608265
7	RAD21	chr9:136607954-136608538	MCF-7	breast:	n/a	chr9:136608166-136608179
8	RAD21	chr9:136607937-136608532	ECC-1	luminal epithelium:	n/a	chr9:136608166-136608179
9	RAD21	chr9:136607985-136608523	ECC-1	luminal epithelium:	n/a	chr9:136608166-136608179
10	RAD21	chr9:136607868-136608589	HCT-116	colon:	n/a	chr9:136608166-136608179
11	CTCF	chr9:136607984-136608537	GM12878	blood:	n/a	chr9:136608256-136608265
12	RAD21	chr9:136608064-136608593	A549	lung:	n/a	chr9:136608166-136608179
13	CTCF	chr9:136607852-136608903	A549	lung:	n/a	chr9:136608256-136608265
14	RAD21	chr9:136607944-136608576	H1-hESC	embryonic stem cell:	n/a	chr9:136608166-136608179
15	BHLHE40	chr9:136608177-136608525	K562	blood:	n/a	n/a
16	MAX	chr9:136608066-136608561	MCF-7	breast:	n/a	n/a
17	CTCF	chr9:136607959-136608523	A549	lung:	n/a	chr9:136608256-136608265
18	CTCF	chr9:136607962-136608566	H1-hESC	embryonic stem cell:	n/a	chr9:136608256-136608265
19	RAD21	chr9:136608013-136608548	Hela-S3	cervix:	n/a	chr9:136608166-136608179
20	CTCF	chr9:136608111-136608551	K562	blood:	n/a	chr9:136608256-136608265
21	CTCF	chr9:136607860-136608610	MCF-7	breast:	n/a	chr9:136608256-136608265
22	MAFK	chr9:136608204-136608544	HepG2	liver:	n/a	n/a
23	SIN3A	chr9:136608095-136608525	H1-hESC	embryonic stem cell:	n/a	n/a
24	RAD21	chr9:136607945-136608588	H1-hESC	embryonic stem cell:	n/a	chr9:136608166-136608179
25	RAD21	chr9:136608061-136608549	HepG2	liver:	n/a	chr9:136608166-136608179
26	CTCF	chr9:136607985-136608552	H1-hESC	embryonic stem cell:	n/a	chr9:136608256-136608265
27	CTCF	chr9:136607803-136608603	HCT-116	colon:	n/a	chr9:136608256-136608265
28	GABPA	chr9:136607981-136608532	H1-hESC	embryonic stem cell:	n/a	n/a
29	RAD21	chr9:136607923-136608687	MCF-7	breast:	n/a	chr9:136608166-136608179
30	RAD21	chr9:136607921-136608633	HepG2	liver:	n/a	chr9:136608166-136608179
31	CTCF	chr9:136607669-136608774	SK-N-SH	brain:	n/a	chr9:136608256-136608265
32	MXI1	chr9:136608122-136608535	H1-hESC	embryonic stem cell:	n/a	n/a
33	RAD21	chr9:136608074-136608528	GM12878	blood:	n/a	chr9:136608166-136608179
34	CTCF	chr9:136608043-136608568	K562	blood:	n/a	chr9:136608256-136608265
35	RAD21	chr9:136607909-136608638	H1-hESC	embryonic stem cell:	n/a	chr9:136608166-136608179
36	CTCF	chr9:136607965-136608550	K562	blood:	n/a	chr9:136608256-136608265
37	CTCF	chr9:136608040-136608538	IMR90	lung:	n/a	chr9:136608256-136608265
38	RAD21	chr9:136607810-136608735	HCT-116	colon:	n/a	chr9:136608166-136608179
39	ATF2	chr9:136608026-136608541	H1-hESC	embryonic stem cell:	n/a	n/a
40	RAD21	chr9:136608044-136608530	IMR90	lung:	n/a	chr9:136608166-136608179
41	CTCF	chr9:136607726-136608786	HCT-116	colon:	n/a	chr9:136608256-136608265

No.	Distal block	Cell Line	Cell type
1	chr9:136607693..136608878-chr9:136859235..136860612,8	MCF-7	breast:
2	chr9:136606898..136609884-chr9:136619797..136622653,2	MCF-7	breast:
3	chr9:136607827..136608773-chr9:136859602..136860351,4	MCF-7	breast:
4	chr9:136608029..136608531-chr9:136858192..136859169,2	MCF-7	breast:
5	chr9:136608275..136608832-chr9:136966155..136966872,2	K562	blood:

Variant related genes	Relation type
SARDH	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv894108	chr9:136507473-136617292	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1049434	chr9:136529766-136618314	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1049281	chr9:136535471-136617805	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv428546	chr9:136541745-136720872	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv894115	chr9:136571089-136617292	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv894116	chr9:136572021-136608669	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv894117	chr9:136600201-136716399	Strong transcription Weak transcription Genic enhancers Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv3429780	chr9:136607447-136628052	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv8577	chr9:136607798-136621845	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv831746	chr9:136607829-136750740	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136605400-136610000	Enhancers	Liver	Liver
2	chr9:136606600-136610600	Weak transcription	Fetal Intestine Small	intestine
3	chr9:136608200-136610000	Enhancers	HepG2	liver
4	chr9:136608200-136616400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:136608400-136608600	Bivalent Enhancer	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links