Variant report

Variant	rs183698372
Chromosome Location	chr3:47726311-47726312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47713394..47715579-chr3:47725306..47727830,2	K562	blood:
2	chr3:47720378..47723144-chr3:47726248..47728156,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv590232	chr3:47681881-47765547	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv876758	chr3:47681881-47842234	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
4	nsv876759	chr3:47725315-47830741	Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
5	nsv237419	chr3:47725466-47727072	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47655800-47765600	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:47656600-47790800	Strong transcription	Fetal Thymus	thymus
3	chr3:47688200-47763400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:47694400-47745800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:47695200-47737200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr3:47698400-47731400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr3:47700200-47757000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:47701200-47765000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:47701200-47765600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:47701400-47739800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:47701600-47762200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:47701600-47800400	Strong transcription	Dnd41	blood
13	chr3:47701600-47819800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:47701800-47726800	Weak transcription	Right Atrium	heart
15	chr3:47702200-47790400	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:47704000-47788600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:47705600-47727200	Weak transcription	Pancreas	Pancrea
18	chr3:47705600-47742800	Weak transcription	Esophagus	oesophagus
19	chr3:47705800-47739200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:47706200-47728000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr3:47707200-47737000	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr3:47707200-47739400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:47707200-47780800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:47707200-47781400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr3:47707600-47737400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr3:47707600-47762600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:47708400-47737400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:47708800-47737000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr3:47709400-47734200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr3:47709800-47732400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr3:47710600-47737200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr3:47710600-47756600	Strong transcription	Placenta	Placenta
33	chr3:47711000-47759400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr3:47711200-47739400	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr3:47711400-47732800	Weak transcription	Stomach Mucosa	stomach
36	chr3:47711400-47757200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:47711600-47740200	Strong transcription	NH-A	brain
38	chr3:47713200-47737200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr3:47713200-47737400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr3:47713600-47739600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr3:47714200-47736800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr3:47714200-47737000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr3:47714600-47742200	Weak transcription	Psoas Muscle	Psoas
44	chr3:47714800-47737000	Strong transcription	Primary T cells from cord blood	blood
45	chr3:47715400-47737200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr3:47716000-47745800	Weak transcription	Fetal Heart	heart
47	chr3:47716000-47747400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr3:47717800-47736200	Strong transcription	Brain Germinal Matrix	brain
49	chr3:47718200-47728000	Strong transcription	Left Ventricle	heart
50	chr3:47719000-47752000	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links