Variant report

Variant	rs1836987
Chromosome Location	chr3:100595700-100595701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100595522..100598378-chr3:100600055..100603377,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1017438	0.87[ASN][1000 genomes]
rs11720318	0.87[ASN][1000 genomes]
rs1370160	0.85[EUR][1000 genomes]
rs1370161	0.86[EUR][1000 genomes]
rs1816567	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1821794	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1836986	0.86[EUR][1000 genomes]
rs2118170	0.87[ASN][1000 genomes]
rs2118171	0.87[ASN][1000 genomes]
rs3821725	0.86[EUR][1000 genomes]
rs4328836	0.88[EUR][1000 genomes]
rs4928093	0.87[EUR][1000 genomes]
rs4928095	0.88[EUR][1000 genomes]
rs62277104	0.87[ASN][1000 genomes]
rs6778625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786325	0.86[EUR][1000 genomes]
rs6786332	0.86[EUR][1000 genomes]
rs6793103	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs68184622	0.87[ASN][1000 genomes]
rs9290245	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9878937	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv514163	chr3:100547342-100670846	Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv3345679	chr3:100595187-100595717	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100583400-100597400	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:100583800-100603400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:100589200-100597600	Weak transcription	Adipose Nuclei	Adipose
4	chr3:100589200-100599000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:100593200-100601600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:100593600-100596800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:100594400-100598000	Weak transcription	Brain Anterior Caudate	brain
8	chr3:100594400-100599000	Weak transcription	Psoas Muscle	Psoas
9	chr3:100594400-100618200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:100594600-100596400	Weak transcription	Small Intestine	intestine
11	chr3:100594600-100597400	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:100594600-100597800	Weak transcription	Fetal Lung	lung
13	chr3:100594600-100597800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:100594600-100598600	Weak transcription	HSMMtube	muscle
15	chr3:100594600-100598800	Weak transcription	NHLF	lung
16	chr3:100594600-100616800	Weak transcription	Ovary	ovary
17	chr3:100594800-100597800	Weak transcription	Fetal Stomach	stomach
18	chr3:100594800-100598000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:100594800-100598000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:100594800-100598400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:100594800-100598600	Weak transcription	NHDF-Ad	bronchial
22	chr3:100594800-100599800	Weak transcription	Hela-S3	cervix
23	chr3:100595000-100598600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:100595200-100600000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:100595400-100599200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links