Variant report

Variant	rs183745139
Chromosome Location	chr9:123222588-123222589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948697	chr9:122774519-123249744	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv825069	chr9:123220951-123294240	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:123193400-123223600	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:123193400-123267600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:123195600-123224200	Strong transcription	HepG2	liver
4	chr9:123195600-123246600	Strong transcription	Dnd41	blood
5	chr9:123196200-123240400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:123198800-123247000	Strong transcription	Primary T cells from cord blood	blood
7	chr9:123201800-123240000	Strong transcription	Primary B cells from cord blood	blood
8	chr9:123202000-123236800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:123204800-123237000	Weak transcription	NHDF-Ad	bronchial
10	chr9:123206000-123233200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr9:123207000-123226200	Weak transcription	NHLF	lung
12	chr9:123207200-123239600	Strong transcription	Hela-S3	cervix
13	chr9:123208000-123248800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:123208800-123294200	Weak transcription	Stomach Mucosa	stomach
15	chr9:123209200-123225200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr9:123209400-123241000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr9:123209400-123242400	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr9:123209600-123228000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr9:123209600-123246800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr9:123210000-123239600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr9:123211000-123240000	Weak transcription	Psoas Muscle	Psoas
22	chr9:123212200-123254200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:123212800-123224800	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr9:123213000-123222800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:123213000-123223000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:123213000-123223000	Strong transcription	Fetal Muscle Trunk	muscle
27	chr9:123213000-123223200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:123213000-123224200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr9:123213200-123223200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:123214600-123223200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr9:123214600-123223800	Strong transcription	Fetal Intestine Large	intestine
32	chr9:123214600-123224000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr9:123214600-123224400	Strong transcription	Fetal Muscle Leg	muscle
34	chr9:123214800-123223000	Strong transcription	Duodenum Mucosa	Duodenum
35	chr9:123214800-123223200	Strong transcription	Adipose Nuclei	Adipose
36	chr9:123215000-123223000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:123215000-123224200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:123216000-123228400	Weak transcription	Gastric	stomach
39	chr9:123216000-123233200	Weak transcription	Small Intestine	intestine
40	chr9:123216200-123229000	Weak transcription	Esophagus	oesophagus
41	chr9:123216400-123228600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr9:123216400-123229200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:123216600-123229200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:123216600-123243000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:123217000-123232600	Weak transcription	HMEC	breast
46	chr9:123217000-123233000	Weak transcription	Brain Substantia Nigra	brain
47	chr9:123217200-123233200	Weak transcription	Brain Angular Gyrus	brain
48	chr9:123217600-123226000	Weak transcription	Colon Smooth Muscle	Colon
49	chr9:123217600-123228400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr9:123217600-123233000	Weak transcription	Colonic Mucosa	Colon

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