Variant report

Variant	rs183752616
Chromosome Location	chr2:58270961-58270962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr2:58270857-58271057	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:58268085..58271557-chr2:58272019..58276950,11	MCF-7	breast:
2	chr2:58269958..58272240-chr2:58464322..58467065,2	K562	blood:
3	chr2:58238094..58240587-chr2:58270384..58272042,2	MCF-7	breast:

Variant related genes	Relation type
VRK2	TF binding region
ENSG00000028116	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834159	chr2:58101262-58283655	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv525988	chr2:58161520-58427786	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv999591	chr2:58214871-58316147	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv582097	chr2:58266099-58346966	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv874201	chr2:58269871-58350504	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv874202	chr2:58269871-58375688	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58251400-58272000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr2:58256600-58271800	Weak transcription	Left Ventricle	heart
3	chr2:58256800-58272800	Weak transcription	Adipose Nuclei	Adipose
4	chr2:58256800-58273000	Weak transcription	Pancreas	Pancrea
5	chr2:58258200-58271800	Weak transcription	Brain Substantia Nigra	brain
6	chr2:58258400-58273000	Weak transcription	Liver	Liver
7	chr2:58258600-58272000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr2:58258800-58273000	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:58260000-58272800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:58260200-58271800	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:58260400-58273400	Weak transcription	Ovary	ovary
12	chr2:58262200-58273000	Weak transcription	Psoas Muscle	Psoas
13	chr2:58263000-58272800	Weak transcription	Brain Anterior Caudate	brain
14	chr2:58266400-58272600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:58266600-58271800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:58266600-58271800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:58266600-58272000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:58266600-58272400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr2:58266600-58273000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:58266600-58273200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:58266800-58271800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr2:58266800-58272000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr2:58266800-58272000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr2:58266800-58273400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:58267000-58272400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr2:58267200-58271400	Weak transcription	Primary B cells from cord blood	blood
27	chr2:58267200-58271400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr2:58267200-58272400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr2:58268000-58272200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr2:58268000-58273000	Weak transcription	Aorta	Aorta
31	chr2:58268000-58273200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr2:58268200-58272000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:58268600-58273400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr2:58269200-58272000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:58269200-58273000	Weak transcription	Esophagus	oesophagus
36	chr2:58269200-58273400	Weak transcription	Gastric	stomach
37	chr2:58269600-58271400	Enhancers	GM12878-XiMat	blood
38	chr2:58270000-58271400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr2:58270000-58272400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr2:58270000-58272400	Weak transcription	NHLF	lung
41	chr2:58270000-58272800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:58270000-58272800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr2:58270000-58273000	Weak transcription	HSMM	muscle
44	chr2:58270000-58273400	Weak transcription	Fetal Brain Male	brain
45	chr2:58270200-58271600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr2:58270200-58271800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr2:58270200-58272200	Weak transcription	Fetal Heart	heart
48	chr2:58270200-58272200	Weak transcription	NHDF-Ad	bronchial
49	chr2:58270200-58272400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr2:58270200-58272400	Weak transcription	HMEC	breast

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