Variant report

Variant	rs183776775
Chromosome Location	chr4:122873522-122873523
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:122873487-122873537	NB4	blood:	n/a
2	chr4:122873487-122873537	RPTEC	kidney:	n/a
3	chr4:122873487-122873537	HNPCEpiC	eye:	n/a
4	chr4:122873487-122873537	HRPEpiC	eye:	n/a
5	chr4:122873487-122873537	NT2-D1	testis:	n/a
6	chr4:122873487-122873537	IMR90	lung:	fetal
7	chr4:122873487-122873537	H1-hESC	embryonic stem cell:	embryo
8	chr4:122873487-122873537	HCPEpiC	choroid plexus:	n/a
9	chr4:122873487-122873537	HRE	kidney:	n/a
10	chr4:122873487-122873537	Hela-S3	cervix:	n/a
11	chr4:122873487-122873537	AG10803	skin:	n/a
12	chr4:122873487-122873537	HL-60	blood:	n/a
13	chr4:122873487-122873537	AG04449	skin:	fetal
14	chr4:122873487-122873537	PFSK-1	brain:	n/a
15	chr4:122873487-122873537	HRCEpiC	kidney:	n/a
16	chr4:122873487-122873537	AG04450	lung:	fetal
17	chr4:122873487-122873537	PANC-1	pancreas:	n/a
18	chr4:122873487-122873537	MCF-7	breast:	n/a
19	chr4:122873487-122873537	Jurkat	blood:	n/a
20	chr4:122873487-122873537	HIPEpiC	eye:	n/a
21	chr4:122873487-122873537	Caco-2	colon:	n/a
22	chr4:122873487-122873537	NHDF-neo	bronchial:	n/a
23	chr4:122873487-122873537	HAEpiC	amniotic membrane:	n/a
24	chr4:122873487-122873537	SK-N-MC	brain:	n/a
25	chr4:122873487-122873537	T-47D	breast:	n/a
26	chr4:122873487-122873537	HepG2	liver:	n/a
27	chr4:122873487-122873537	ECC-1	luminal epithelium:	n/a
28	chr4:122873487-122873537	A549	lung:	n/a
29	chr4:122873487-122873537	SAEC	small airway:	n/a
30	chr4:122873487-122873537	HPAEpiC	pulmonary alveolar:	n/a
31	chr4:122873487-122873537	U87	brain:	n/a
32	chr4:122873487-122873537	AG09319	gingival:	n/a
33	chr4:122873487-122873537	SK-N-SH_RA	brain:	n/a
34	chr4:122873487-122873537	SKMC	muscle:	n/a
35	chr4:122873487-122873537	GM19239	blood:	n/a
36	chr4:122873487-122873537	HEEpiC	esophagus:	n/a
37	chr4:122873487-122873537	AG09309	skin:	n/a
38	chr4:122873487-122873537	NHBE	bronchial:	n/a
39	chr4:122873487-122873537	GM12891	blood:	n/a
40	chr4:122873487-122873537	HUVEC	blood vessel:	n/a
41	chr4:122873487-122873537	MCF10A-Er-Src	breast:	n/a
42	chr4:122873487-122873537	GM12878	blood:	n/a
43	chr4:122873487-122873537	HCT-116	colon:	n/a
44	chr4:122873487-122873537	Hepatocyte	liver:	n/a
45	chr4:122873487-122873537	HCF	heart:	n/a
46	chr4:122873487-122873537	NH-A	brain:	n/a
47	chr4:122873487-122873537	BJ	skin:	n/a
48	chr4:122873487-122873537	SK-N-SH	brain:	n/a
49	chr4:122873487-122873537	AoSMC	blood vessel:	n/a
50	chr4:122873487-122873537	GM12892	blood:	n/a

No data

Variant related genes	Relation type
TRPC3	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817261	chr4:122085173-123020068	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv997539	chr4:122544104-123274266	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv530157	chr4:122557302-123248756	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1843861	chr4:122871632-122878371	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
5	esv1844606	chr4:122871632-122878371	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a
6	esv3409009	chr4:122871727-122874275	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:122870800-122873800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:122871000-122873600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr4:122871000-122873600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
4	chr4:122871000-122873600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr4:122871000-122873600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr4:122871200-122873600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
7	chr4:122871200-122873600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:122871200-122873600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:122871200-122873600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:122871200-122873600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:122871200-122873600	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr4:122871200-122873600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:122871200-122873600	Active TSS	Brain Substantia Nigra	brain
14	chr4:122871200-122873600	Bivalent/Poised TSS	Fetal Lung	lung
15	chr4:122871200-122873600	Active TSS	K562	blood
16	chr4:122871200-122873800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
17	chr4:122871200-122874000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr4:122871600-122873600	Active TSS	Aorta	Aorta
19	chr4:122871800-122873600	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:122872000-122873600	Bivalent Enhancer	Liver	Liver
21	chr4:122872200-122873600	Active TSS	Fetal Brain Female	brain
22	chr4:122872400-122873600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
23	chr4:122872400-122873600	Active TSS	Muscle Satellite Cultured Cells	--
24	chr4:122872400-122873600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
25	chr4:122872400-122873600	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr4:122872400-122873600	Bivalent/Poised TSS	Sigmoid Colon	Sigmoid Colon
27	chr4:122872400-122873600	Flanking Bivalent TSS/Enh	Thymus	Thymus
28	chr4:122872600-122873600	Active TSS	Brain Cingulate Gyrus	brain
29	chr4:122872600-122873600	Bivalent Enhancer	Fetal Thymus	thymus
30	chr4:122872600-122873600	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
31	chr4:122872800-122873600	Bivalent/Poised TSS	HSMMtube	muscle
32	chr4:122873000-122873600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:122873000-122873600	Active TSS	Adipose Nuclei	Adipose
34	chr4:122873000-122873600	Active TSS	Fetal Muscle Trunk	muscle
35	chr4:122873200-122873600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr4:122873200-122873600	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr4:122873200-122873600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
38	chr4:122873200-122873600	Active TSS	Primary T cells fromperipheralblood	blood
39	chr4:122873200-122873600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
40	chr4:122873200-122873600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:122873200-122873600	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
42	chr4:122873200-122873600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:122873200-122873600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr4:122873200-122873600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
45	chr4:122873200-122873600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
46	chr4:122873200-122873800	Active TSS	Fetal Stomach	stomach
47	chr4:122873200-122874000	Bivalent/Poised TSS	Psoas Muscle	Psoas
48	chr4:122873200-122874200	Enhancers	Brain Angular Gyrus	brain
49	chr4:122873400-122873600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:122873400-122873600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links