Variant report

Variant	rs183799594
Chromosome Location	chr18:9561070-9561071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr18:9560918-9561177	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9550057..9552721-chr18:9560835..9563453,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIEZO2-15	chr18:9561046-9561395	expReg_chr18_591_-

Variant related genes	Relation type
PPP4R1	TF binding region
ENSG00000154845	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	esv3412126	chr18:9560690-9561109	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9544000-9570200	Strong transcription	Fetal Intestine Large	intestine
2	chr18:9544000-9575600	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr18:9544200-9563600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr18:9544600-9561600	Strong transcription	Stomach Smooth Muscle	stomach
5	chr18:9544600-9563600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr18:9544600-9563600	Strong transcription	Brain Cingulate Gyrus	brain
7	chr18:9544600-9564200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr18:9544600-9564200	Strong transcription	Placenta	Placenta
9	chr18:9544800-9562000	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr18:9544800-9564600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr18:9544800-9565000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr18:9544800-9572200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr18:9544800-9572400	Strong transcription	Primary T cells from cord blood	blood
14	chr18:9545000-9562600	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr18:9545000-9563800	Strong transcription	Osteobl	bone
16	chr18:9545000-9564200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr18:9545000-9564200	Strong transcription	Adipose Nuclei	Adipose
18	chr18:9545000-9564400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr18:9545200-9561400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr18:9545200-9561600	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr18:9545200-9563400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr18:9545200-9572600	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr18:9545400-9564000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr18:9545800-9563600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr18:9545800-9564200	Strong transcription	Fetal Thymus	thymus
26	chr18:9545800-9565000	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr18:9545800-9570200	Strong transcription	Duodenum Mucosa	Duodenum
28	chr18:9545800-9583600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr18:9545800-9595200	Strong transcription	Dnd41	blood
30	chr18:9546000-9563800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr18:9546200-9564200	Strong transcription	Left Ventricle	heart
32	chr18:9546400-9563600	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr18:9547000-9564000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr18:9549000-9562600	Strong transcription	Rectal Smooth Muscle	rectum
35	chr18:9549600-9581800	Weak transcription	Psoas Muscle	Psoas
36	chr18:9551000-9612200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr18:9552200-9565800	Strong transcription	HSMM	muscle
38	chr18:9552200-9565800	Strong transcription	NH-A	brain
39	chr18:9552400-9564200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr18:9553000-9563600	Strong transcription	Fetal Lung	lung
41	chr18:9553000-9572400	Strong transcription	Fetal Muscle Trunk	muscle
42	chr18:9553000-9573000	Strong transcription	Fetal Muscle Leg	muscle
43	chr18:9553000-9573600	Strong transcription	NHDF-Ad	bronchial
44	chr18:9553200-9564400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr18:9553200-9572600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr18:9553200-9575800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr18:9553400-9563600	Strong transcription	Fetal Intestine Small	intestine
48	chr18:9553400-9565200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr18:9553600-9563600	Strong transcription	Fetal Stomach	stomach
50	chr18:9553800-9561400	Weak transcription	Fetal Heart	heart

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