Variant report

Variant	rs183823102
Chromosome Location	chr22:30327224-30327225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1064489	chr22:30316627-30361881	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv869764	chr22:30323649-30367813	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv523696	chr22:30326102-30381789	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30305600-30327400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr22:30310000-30327600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr22:30311000-30333200	Weak transcription	Primary B cells from cord blood	blood
4	chr22:30311600-30343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr22:30311800-30340400	Weak transcription	HSMM	muscle
6	chr22:30312600-30339800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr22:30313000-30343800	Weak transcription	Fetal Stomach	stomach
8	chr22:30313600-30339800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr22:30313600-30354200	Weak transcription	Small Intestine	intestine
10	chr22:30314200-30334200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr22:30314400-30328200	Weak transcription	Osteobl	bone
12	chr22:30314600-30329200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr22:30318000-30334000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr22:30319800-30329800	Weak transcription	Right Atrium	heart
15	chr22:30319800-30333800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr22:30320400-30328200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr22:30320400-30331200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr22:30320400-30333800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr22:30320600-30339800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr22:30321200-30329000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr22:30321400-30328000	Weak transcription	Colon Smooth Muscle	Colon
22	chr22:30321400-30330200	Weak transcription	Left Ventricle	heart
23	chr22:30321400-30331200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr22:30321400-30339800	Weak transcription	Lung	lung
25	chr22:30321800-30334000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr22:30322000-30328000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr22:30322000-30332200	Weak transcription	Fetal Intestine Small	intestine
28	chr22:30322600-30327800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr22:30324400-30337800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr22:30324600-30328400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr22:30325200-30328400	Weak transcription	Adipose Nuclei	Adipose
32	chr22:30326400-30327600	Enhancers	Pancreas	Pancrea
33	chr22:30326400-30327800	Enhancers	Psoas Muscle	Psoas
34	chr22:30326400-30328000	Enhancers	Ovary	ovary
35	chr22:30326800-30328000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr22:30326800-30330600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr22:30327000-30327400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr22:30327000-30330400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr22:30327200-30328400	Enhancers	Duodenum Smooth Muscle	Duodenum

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