Variant report

Variant	rs183823224
Chromosome Location	chr5:177020482-177020483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:176978290..176981747-chr5:177017313..177020640,7	MCF-7	breast:
2	chr5:176943414..176949809-chr5:177018256..177021226,8	MCF-7	breast:
3	chr5:176946312..176949197-chr5:177018379..177020484,2	K562	blood:
4	chr5:176979031..176980967-chr5:177019678..177022578,2	MCF-7	breast:
5	chr5:176959784..176964247-chr5:177018558..177022874,5	MCF-7	breast:
6	chr5:176939485..176941829-chr5:177017923..177020658,4	MCF-7	breast:
7	chr5:176923095..176925209-chr5:177019148..177022259,3	MCF-7	breast:
8	chr5:177019232..177020994-chr5:177656791..177659399,2	K562	blood:
9	chr5:176942293..176944420-chr5:177019101..177021147,2	MCF-7	breast:
10	chr5:176980076..176982423-chr5:177017925..177021146,3	K562	blood:
11	chr5:176936816..176938708-chr5:177019651..177022498,2	MCF-7	breast:
12	chr5:176951222..176953772-chr5:177019144..177020770,2	MCF-7	breast:
13	chr5:177018435..177020960-chr5:177539226..177540753,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146094	Chromatin interaction
ENSG00000145911	Chromatin interaction
ENSG00000183258	Chromatin interaction
ENSG00000196923	Chromatin interaction
ENSG00000272459	Chromatin interaction
ENSG00000175309	Chromatin interaction
ENSG00000146067	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916108	chr5:176688459-177078723	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
2	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
3	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1022630	chr5:176975746-177028082	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv537966	chr5:176975746-177028082	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv883181	chr5:176978496-177034786	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	esv3348457	chr5:176995395-177020808	Active TSS Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv883183	chr5:177019379-177030351	Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177018600-177020600	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr5:177018800-177020600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:177019200-177020600	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
4	chr5:177019800-177020600	Flanking Active TSS	Colon Smooth Muscle	Colon
5	chr5:177019800-177020600	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr5:177020000-177020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:177020000-177020600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:177020000-177020600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr5:177020000-177020600	Weak transcription	Ovary	ovary
10	chr5:177020000-177020600	Enhancers	Stomach Mucosa	stomach
11	chr5:177020000-177020800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:177020000-177020800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:177020000-177020800	Enhancers	Fetal Heart	heart
14	chr5:177020000-177021400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr5:177020000-177023200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:177020200-177020600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:177020200-177020600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:177020200-177020600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr5:177020200-177020600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:177020200-177020600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:177020200-177020600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:177020200-177020600	Genic enhancers	Primary hematopoietic stem cells	blood
23	chr5:177020200-177020600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:177020200-177020600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr5:177020200-177020600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
26	chr5:177020200-177020600	Weak transcription	Aorta	Aorta
27	chr5:177020200-177020600	Weak transcription	Esophagus	oesophagus
28	chr5:177020200-177020600	Genic enhancers	Fetal Intestine Small	intestine
29	chr5:177020200-177020600	Flanking Active TSS	Right Ventricle	heart
30	chr5:177020200-177020600	Flanking Active TSS	HMEC	breast
31	chr5:177020200-177020800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr5:177020200-177020800	Genic enhancers	Brain Anterior Caudate	brain
33	chr5:177020200-177020800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr5:177020200-177020800	Genic enhancers	Fetal Brain Male	brain
35	chr5:177020200-177020800	Enhancers	Psoas Muscle	Psoas
36	chr5:177020200-177020800	Genic enhancers	Rectal Mucosa Donor 31	rectum
37	chr5:177020200-177020800	Enhancers	Right Atrium	heart
38	chr5:177020200-177020800	Transcr. at gene 5' and 3'	HepG2	liver
39	chr5:177020200-177020800	Genic enhancers	Monocytes-CD14+_RO01746	blood
40	chr5:177020200-177020800	Transcr. at gene 5' and 3'	NHEK	skin
41	chr5:177020200-177020800	Transcr. at gene 5' and 3'	Osteobl	bone
42	chr5:177020200-177021000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:177020200-177021000	Genic enhancers	Primary B cells from cord blood	blood
44	chr5:177020200-177021000	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr5:177020200-177021000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:177020200-177021000	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr5:177020200-177021000	Genic enhancers	Brain Hippocampus Middle	brain
48	chr5:177020200-177021000	Genic enhancers	Brain Inferior Temporal Lobe	brain
49	chr5:177020200-177021000	Genic enhancers	Brain Substantia Nigra	brain
50	chr5:177020200-177021000	Genic enhancers	Fetal Brain Female	brain

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