Variant report
Variant | rs183838 |
---|---|
Chromosome Location | chr3:144037960-144037961 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr17:56707384..56710273-chr3:144036844..144039092,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000212195 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1032814 | 0.91[EUR][1000 genomes] |
rs1102118 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs1156767 | 0.89[EUR][1000 genomes] |
rs1393883 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1608999 | 0.82[CHB][hapmap] |
rs1725559 | 0.89[EUR][1000 genomes] |
rs1725560 | 0.89[EUR][1000 genomes] |
rs1725561 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs197826 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs197827 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs197828 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs197829 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs197832 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs197842 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs197854 | 0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs197855 | 0.81[EUR][1000 genomes] |
rs2569960 | 0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs4524322 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4681214 | 0.89[EUR][1000 genomes] |
rs4681649 | 0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4681650 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6440239 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs905524 | 0.88[EUR][1000 genomes] |
rs931772 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs931773 | 0.81[ASW][hapmap];0.83[CEU][hapmap];0.87[GIH][hapmap];0.88[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs9814110 | 0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9835986 | 0.82[CHB][hapmap] |
rs9878391 | 0.82[CHB][hapmap];0.80[TSI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1010117 | chr3:143750590-144093775 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
2 | nsv536748 | chr3:143750590-144093775 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
3 | nsv532633 | chr3:143802417-144440646 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
4 | nsv1002032 | chr3:143848755-144065468 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv877570 | chr3:143853149-144123401 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
6 | nsv591926 | chr3:143873901-144058395 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv1011685 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | nsv536751 | chr3:143959237-144218424 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv591927 | chr3:143998527-144054686 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:144037800-144038200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr3:144037800-144038400 | Enhancers | H1 Cell Line | embryonic stem cell |